Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00907 ATGGACCAAATGAAAGTCCCTTATCAAGGAGGTGTGTGGAAAGTAAGAGTTGAGCTACCGGATGCTTATCCTTATAAGTCTCCTTCTATTGGCTTCATCAATAAGATCTATCACCCAAATGTCGATGAGATGTCCGGATCGGTTTGTCTTGATGTTATCAATCAGACATGGAGCCCGATGTTTGATCTTGTCAATGTATTTGAGGTGTTTCTGCCACAACTCCTTCTGTATCCAAATCCATCGGATCCCTTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGACCGACCTACTTATGACCAAAGGGTTAAAGAGTACTGCGAGAAATACGCCAAGCCAGAAGACATTGGAGCTGCGACAGAAGAGAAATCAAGTGATGATGAAGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTGGCTGGTAAAGCAGACCCCTAG 453 0.4371 MDQMKVPYQGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPTYDQRVKEYCEKYAKPEDIGAATEEKSSDDEDEELTEDEYDSSDEQVAGKADP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00907 150 MobiDBLite consensus disorder prediction 110 150 - -
Vifa4g00907 150 SMART ubc_7 1 112 - -
Vifa4g00907 150 MobiDBLite consensus disorder prediction 121 139 - -
Vifa4g00907 150 FunFam ubiquitin-conjugating enzyme E2 H isoform X2 3 123 - -
Vifa4g00907 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 37 53 IPR023313 -
Vifa4g00907 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 112 IPR000608 -
Vifa4g00907 150 SUPERFAMILY UBC-like 7 112 IPR016135 -
Vifa4g00907 150 Pfam Ubiquitin-conjugating enzyme 5 106 IPR000608 -
Vifa4g00907 150 CDD UBCc 7 107 IPR000608 -
Vifa4g00907 150 Gene3D Ubiquitin Conjugating Enzyme 3 125 IPR016135 -
Vifa4g00907 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00907 Vifa-Chr4 263306693 263309029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00907 K10576 - gmx:548025 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00907 4 263306693 263309029 Vifa4g00907 4 263306693 263309029 ECH