Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00703 ATGCAAGTGCTTAGTCCTTCAATGCTATTTGCACCCCCAAATGCAAATGAAAGTTTCATGAATGAAAACAAACAATGTCATGACAATACAACTTCTCTACCATTACAAATTACCAACATACCCTCAGAGTTCATATGGCCAGAACATGAGAAACCATGTTTAACACCACCAAAACTTGAAGTTCCACCTATTGATTTAAAAGCTTTTCTCTCTAATGATCCAAATTCCATCTCAAATGCTTGTTCAAAAGTGTATCATGCATGCAAAAAACATGGCTTTTTTCTTGTTGTTAACCATGGTGTTGATAACAAACTCATAGCTCAAGCTCATAAGCTTGTTGATGAATTCTTCTGCATGCAACTATCTGAGAAGCAAAGAGCTCAAAGAAAGATGGGTGAACATTGTGGTTATGCTAATAGTTTTATTGGAAGATTTTCTTCCAAACTTCCATGGAAGGAAACACTCTCTTTTCGTTACTCCGGGAACAACTCATGCAAAACTGTGGAGGACTATTTTGTAAATGTCATGGGAGAAGATTTCAGACAATTTGGGAGTGTGTACCAAAACTATTGTGAAGCTATGAGCAATCTCTCTCTTAGCATAATGGAGCTTCTTGGTATGAGCCTAGGAGTTGACAAGGAATATTTTAGAAACTTTTTTGAAGGAAATGACTCAGTTATGAGATTGAATTACTATCCACCATGCAAAAATCCTGATTTAGCATTAGGAACTGGACCTCATTGTGACCCTACTTCACTAACCATTCTCCACCAAGATCAAGTTGAAGGTCTTCAAGTGCTTGTGGATGGAATATGGCACTCAGTTGTTCCTAAAGAAGATGCTTTCGTGGTCAACATTGGTGACACATTTATGGCTCTATCAAATGGAATTTTCAAGAGTTGCTTGCATAGAGCAATTGTAAATGACAAAATAGTGAGAAAATCACTTGCATTTTTTCTCTGTCCAAATGAAGACAAAATGGTCACTCCTCCAAAAGAGCTTATTACCAAAGAGAATCCAAGGAAATATCCAAACTTCACATGGCCAAGTTTGCTTGAATTTACACAAAAATATTACAGGGCTGATGAAAGAACACTTGATGTTTTTTCAATGTGGCTACAAGAAAAAACAAGTACCTAG 1140 0.3675 MQVLSPSMLFAPPNANESFMNENKQCHDNTTSLPLQITNIPSEFIWPEHEKPCLTPPKLEVPPIDLKAFLSNDPNSISNACSKVYHACKKHGFFLVVNHGVDNKLIAQAHKLVDEFFCMQLSEKQRAQRKMGEHCGYANSFIGRFSSKLPWKETLSFRYSGNNSCKTVEDYFVNVMGEDFRQFGSVYQNYCEAMSNLSLSIMELLGMSLGVDKEYFRNFFEGNDSVMRLNYYPPCKNPDLALGTGPHCDPTSLTILHQDQVEGLQVLVDGIWHSVVPKEDAFVVNIGDTFMALSNGIFKSCLHRAIVNDKIVRKSLAFFLCPNEDKMVTPPKELITKENPRKYPNFTWPSLLEFTQKYYRADERTLDVFSMWLQEKTST 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00703 379 FunFam Gibberellin 20 oxidase 2 32 360 - -
Vifa4g00703 379 Pfam non-haem dioxygenase in morphine synthesis N-terminal 61 161 IPR026992 -
Vifa4g00703 379 Gene3D - 32 360 IPR027443 -
Vifa4g00703 379 PRINTS Isopenicillin N synthase signature 247 268 - -
Vifa4g00703 379 PRINTS Isopenicillin N synthase signature 84 101 - -
Vifa4g00703 379 PRINTS Isopenicillin N synthase signature 282 308 - -
Vifa4g00703 379 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 222 322 IPR005123 -
Vifa4g00703 379 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 61 351 - -
Vifa4g00703 379 Pfam 2OG-Fe(II) oxygenase superfamily 224 322 IPR044861 -
Vifa4g00703 379 SUPERFAMILY Clavaminate synthase-like 35 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00703 Vifa-Chr4 204707316 204709536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00703 24 360 Glycosyltransferase AT5G59530 30.199 5.30e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00703 K05282 - gmx:100777224 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00703 4 204707316 204709536 Vifa4g00703 4 204707316 204709536 ECH