Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00686 ATGGCGGACCACACCACCCTCACCTCCCCGTTACTCCCCTCCGACCACCTAATCCTCACCGTCGACTCCGATTCCAGCTCCGCCTCATCCACAACCAACGCCTCTCCAATCTCCAGCCCCTTCACCACCCTAGGTTTCACCACGGGGGAGTTGACTGTCCCGCCGGGGATCACGGTGGACCCGTTCCAGAACTGTAAAGCAGGGATTAACGGGTATGTTGCTACTAAGCTAGCACTTTATCGTTGGAGAGATAAAGAGAATCCTATGCCTAGGTGGAGGAGTCGGATTATGTGGGTCACGAGAATTGCAGCTAGGTTCATTCTGTTTTCTTTCGGCTATCATTGGATAAAACGGAAAGGAAAACCTGCCCCAAGGGAAGTCGCTCCAATAATTGTATCTAATCATGTATCTTATATTGAGCCTATCTTCTATTTCTATGAATTATTTGCCACCATCGTGGCATCTGAGTCTCATGACTCCATACCTTTTGTTGGCACAATCATTAGAGCAATGCAGGTCATATATGTTAACAGGTTCTCACCATCATCAAGGAAGCAGGCTGTAAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTACTTTTATTTCCCGAGGGAACGACTACTAACGGCCGGAACCTCATTTCCTTCCAACTCGGTGCATTTATCCCTGGGTACCCTATCCAGCCTATAATTGTGCGCTATCCTCATGTGCACTTTGATCAATCTTGGGGTAATGTTTCTTTGGGACAACTTATGTTCAGGATGTTCACTCAATTCCACAATTTCTTTGAGGTAGAATATCTTCCTGTCATTTCACCCCTAGATGACAAGGAAACCGCTGTGCATTTTCGTAAAAGGACTAGCCATGCTATTTCAACTGCATTGAATACTGTCCAAACTGGACATTCTTATGGAGATATAATGCTTCATATGAGAGCACAAGAAGCAAAACAGGAGAACCCCTCGAGTTACATGGTTGAAATGGCCAAAGTGGAATCATTATTTCATATCAGCAGCTTGGAAGCTGTGGACTTTTTGGATAAATTCTTGGCTATGAATCCCGATCCCAGTGGCCGTGTTCAATATCGTGGCTTTTTGAGCGTTTTAAGACTCAGGGCCTGTCCTCTTGCTGAAAATATATTTGCATTCATTGACGTGGATAAGTGTGGGAAAATTACATTCAAACAGTTCTTGTATGGATCTGCACATGTCATGAAGCAGCCAGGGTTTTGTCAAGCCTGTGAAATAACCTTTGCTGAGTGTGGCGGTGCAGTAAAGGGCTACATCGTGGAAGAAGAATTACGAGATTCCATCCAATCTGCTCTCCCTAGCTGGAACGAGGACGAGGTCCATCATCTTTTTGTGTTATTTGATGAGGATAATGATGAAAAAATTTACAAGGATGATTTTCTTTCATGCCTCAGAAGAAATCCTCTTCTCATAGCTCTTTTTACACCTCAACCGGAGCTCAAGGAATCATGTGGTAATGGAGTGCTGGAGATTGTTTGA 1521 0.4451 MADHTTLTSPLLPSDHLILTVDSDSSSASSTTNASPISSPFTTLGFTTGELTVPPGITVDPFQNCKAGINGYVATKLALYRWRDKENPMPRWRSRIMWVTRIAARFILFSFGYHWIKRKGKPAPREVAPIIVSNHVSYIEPIFYFYELFATIVASESHDSIPFVGTIIRAMQVIYVNRFSPSSRKQAVREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPIIVRYPHVHFDQSWGNVSLGQLMFRMFTQFHNFFEVEYLPVISPLDDKETAVHFRKRTSHAISTALNTVQTGHSYGDIMLHMRAQEAKQENPSSYMVEMAKVESLFHISSLEAVDFLDKFLAMNPDPSGRVQYRGFLSVLRLRACPLAENIFAFIDVDKCGKITFKQFLYGSAHVMKQPGFCQACEITFAECGGAVKGYIVEEELRDSIQSALPSWNEDEVHHLFVLFDEDNDEKIYKDDFLSCLRRNPLLIALFTPQPELKESCGNGVLEIV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00686 506 CDD LPLAT_LPCAT1-like 104 312 IPR045252 GO:0008374
Vifa4g00686 506 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 96 286 - -
Vifa4g00686 506 SMART plsc_2 129 239 IPR002123 GO:0016746
Vifa4g00686 506 Pfam Acyltransferase 126 233 IPR002123 GO:0016746
Vifa4g00686 506 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 71 331 - -
Vifa4g00686 506 Gene3D - 330 484 - -
Vifa4g00686 506 Pfam EF-hand domain pair 430 480 IPR002048 GO:0005509
Vifa4g00686 506 SUPERFAMILY EF-hand 340 488 IPR011992 -
Vifa4g00686 506 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00686 Vifa-Chr4 197312260 197321417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00686 89 282 Acyl Lipid Metabolism Gene Families AT1G80950 31.696 1.88e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00686 K13510 - gmx:100818109 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00686 4 197312260 197321417 Vifa4g00686 4 197312260 197321417 ECH