Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00638 ATGGACCACAAAGAAGAAGTGTTAGAGTTTCTCGGACGCGTTCCGCTACTACAGAGGCTTCCTAGTTCGTCTATAAAGAAGATATCAGAACTTGTGGTTGTTAAACACTATGAGCGAGGGGAGTATGTTGCACGTGAGGATGAACCGGGAGATGGAACTTACTTCATATGGGATGGAGAGGCTGAGGTTATTGGATCTGTTAGTGCCCATGATGAAAATCGTTCAGAGTTCCAATTGAATAAATATGGCTACTTTGGTTGTGGTTTGTCAAATACAGTTCACAATGCAGATGTTGTTGCTTTGTCTAAGCTAACATGCTTAGTGCTTCCCCGTGAGCACGTAGCACTGCTATGGCCAAAGTCAATATGGAGCGCAGAAAAACATCCCGAGAGGTGCTCAGCTATGGAGAATATATTGCAATTAGAACCACTAGAGGAAGATATCTTCCAAGGAATCACTCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGACAGCTGGTTGGACAGGCACTAGCTGCTGCATCAAAATCTGTTGACTGCCTTAAGTTACTTCATAGTTTGCATGCCTATTTTCTTCGTATAGGAGACTTACACATGCCAATCATATATCAAGTTTATCGTCTCCGCGACGGAAAGAGCTTTGCTACACGGAAAGTGGATGCAATGCAAAACGGGAAAGTCATATTCACTTTGCTGGCTTCATTTCAGGTAGAAGAATCAGCATTTGACCACCAGGAAGTAGCTATGCCATCTGTCCCTGCACCAGAAATGCTTCTGCCATTAGAAGAGCTACGGGAGAGACGTCTAACTGAGCCTCGCTTGCCAATAACTTACCGGAACAAAGTGGCTACTACTGAGTTCATCCCCTGGCCAATAGAGATACGGTTCTGTGAACCTAAAGTTGCAACAAATCAGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTCGATCAAAGGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTCTGTAGTAGCTTATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCACATCGTGAGAAAGGTTTCAGGGCACGTGGCGTTAGTCTGGATCATGCAATGTGGTTTCACCGACCCATAAAAGCTGATGAGTGGGTGCTATTTGCGGTCTTCACTCCTACTGCATATGAAGCACGCGGCTTTGTCATAGGTCAGATGTTCAATCAAAAGGAAGAGCTTCTTGTAACAGTGATTCAAGAAGGTCTAACAAGGAGAGTTGATCCCGATATTTCAGCCACCAAATCTAAGCTGTGA 1293 0.4401 MDHKEEVLEFLGRVPLLQRLPSSSIKKISELVVVKHYERGEYVAREDEPGDGTYFIWDGEAEVIGSVSAHDENRSEFQLNKYGYFGCGLSNTVHNADVVALSKLTCLVLPREHVALLWPKSIWSAEKHPERCSAMENILQLEPLEEDIFQGITLPDAPRFGKVFGGQLVGQALAAASKSVDCLKLLHSLHAYFLRIGDLHMPIIYQVYRLRDGKSFATRKVDAMQNGKVIFTLLASFQVEESAFDHQEVAMPSVPAPEMLLPLEELRERRLTEPRLPITYRNKVATTEFIPWPIEIRFCEPKVATNQTKSPPSLRYWFRSKGKLSDDQALHRSVVAYASDLIFLQVSLNPHREKGFRARGVSLDHAMWFHRPIKADEWVLFAVFTPTAYEARGFVIGQMFNQKEELLVTVIQEGLTRRVDPDISATKSKL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00638 430 Pfam Cyclic nucleotide-binding domain 35 114 IPR000595 -
Vifa4g00638 430 Gene3D Jelly Rolls 1 124 IPR014710 -
Vifa4g00638 430 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 249 417 IPR029069 -
Vifa4g00638 430 Pfam Thioesterase-like superfamily 162 415 - -
Vifa4g00638 430 CDD Thioesterase_II_repeat2 147 239 - -
Vifa4g00638 430 FunFam Acyl-CoA thioesterase II 1 125 - -
Vifa4g00638 430 PANTHER ACYL-COA THIOESTERASE 108 419 IPR003703 GO:0006637|GO:0047617
Vifa4g00638 430 CDD Thioesterase_II_repeat1 314 415 - -
Vifa4g00638 430 FunFam Acyl-CoA thioesterase II 130 420 - -
Vifa4g00638 430 SUPERFAMILY cAMP-binding domain-like 5 117 IPR018490 -
Vifa4g00638 430 SMART cnmp_10 16 136 IPR000595 -
Vifa4g00638 430 ProSiteProfiles cAMP/cGMP binding motif profile. 16 86 IPR000595 -
Vifa4g00638 430 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 134 242 IPR029069 -
Vifa4g00638 430 Gene3D - 130 419 IPR042171 -
Vifa4g00638 430 CDD CAP_ED 16 113 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00638 Vifa-Chr4 182159730 182167323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00638 3 430 Acyl Lipid Metabolism Gene Families AT1G01710 64.486 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00638 K01068 - gmx:100803260 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00638 4 182159730 182167323 Vifa4g00638 4 182159730 182167323 ECH