Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00636 ATGGAGCTTTTAGATAATGAGGAAGCATCGTCATCGAATAATGATGAAGTAAAAGTCACTATTAATACTCGGCTGATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGCTTGGCAAGAGTTCCTAGAACATATCATTCAGTTCTGAGGGCTGTTTCAAAGAGATGGAGGGACTTAGTTTCCAGCAAAGAGTGGCTTCATTATCGAAGAAAGCATAAACTTGATGAGACATGGATCTATGCTTTGTGCAGGGACAAATTGGATCATGTTTGCTGTTATGTTTTGGATCCAACCTCGTCGACAAAATCTTGGAAGCTCGTTCATGGGCTTCCGCCTCATATCGTGAGAAGGAAAGGCATGGGTTTTGAAGCTTTGGGAAATAAGCTTTTCTTATTGGGTGGCTGTGGCTGGTCTGAAGATGCTACTGATGAGGTTTATTCATACAATGCTTCCTCGAACTCTTGGGTTCAAGATGCTTCATTGTCAACTGCTAGGTGCTACTTTGCTTGTGAGGTTATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGCGATCCTCATTCGTGGGATACTTTTGATCCTCGCATCAATGGTTGGACATCTCACAAAGATCCAAATATTGTTCCCGAAATTGAAGATTCAATAGTCATGGACGGAAAAATATACATCCGATGTGGCAAATCTCCTGTAACACCTCACGTGTATGCTGTTGTATACGAACCATCAAGCGGCACATGGCAGCATGCAGAAGCTGACATGGTTTCAGGATGGAGAGGTCCTGCGGTTGTTGTGGACGGAATCCTTTTTGTTTTGGATCAAAGTTCAGGTACCAGGCTAATGATGTGGCGTAACCAGACACGCGCGTGGATACCAGTTGGTAAGTTGTCACCGTTGCGCACAAGACCACCCTGCCAACTCGTTGCAGTTGGTAAAAGCATTTATATCATCGGAAAAGAGCTTAGCACTGTGGTTGTTGATGTTGGCGATATTGAAAATACAGGAAGGTTGATGGTGGGTTCTTCTATACCTAAATTAGTCTCTGATTACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA 1092 0.4249 MELLDNEEASSSNNDEVKVTINTRLICGLPDDISLLCLARVPRTYHSVLRAVSKRWRDLVSSKEWLHYRRKHKLDETWIYALCRDKLDHVCCYVLDPTSSTKSWKLVHGLPPHIVRRKGMGFEALGNKLFLLGGCGWSEDATDEVYSYNASSNSWVQDASLSTARCYFACEVMDEKLYAIGGIGSNSSDPHSWDTFDPRINGWTSHKDPNIVPEIEDSIVMDGKIYIRCGKSPVTPHVYAVVYEPSSGTWQHAEADMVSGWRGPAVVVDGILFVLDQSSGTRLMMWRNQTRAWIPVGKLSPLRTRPPCQLVAVGKSIYIIGKELSTVVVDVGDIENTGRLMVGSSIPKLVSDYNVISCKCLSI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00636 363 Gene3D - 70 338 IPR015915 GO:0005515
Vifa4g00636 363 Pfam F-box domain 27 63 IPR001810 GO:0005515
Vifa4g00636 363 SUPERFAMILY Kelch motif 89 327 IPR015915 GO:0005515
Vifa4g00636 363 CDD F-box_AtAFR-like 25 69 - -
Vifa4g00636 363 SMART fbox_2 29 68 IPR001810 GO:0005515
Vifa4g00636 363 Pfam Galactose oxidase, central domain 126 170 - -
Vifa4g00636 363 SUPERFAMILY F-box domain 25 74 IPR036047 GO:0005515
Vifa4g00636 363 PANTHER OS02G0202900 PROTEIN 8 334 IPR045887 -
Vifa4g00636 363 SMART kelc_smart 128 175 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00636 Vifa-Chr4 181474031 181475357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00636 29 261 Miscellaneous Gene Families AT4G33900 26.587 9.62e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00636 - - gmx:100798211 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00636 4 181474031 181475357 Vifa4g00636 4 181474031 181475357 ECH