Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00580 ATGGCAGAAACAACAAAAAGGTATGCAGTTGTTACAGGAGCAAACAAAGGAATAGGATTTGCAGTATGCAAACAATTGGCTTCTAAAGGGGTCACTGTTGTGCTTACAGCAAGAGATGAAAATAGAGGTCTTGAAGCTGTTGACAAATTGAAGCAACTTTATCTACCTGACCTTGTGATTTTTCATCAACTTGATGTCACAGATCCTGCAAGTATAACATCATTTGCAGATTTTATCCAGAATCAATTTGGAAAACTTGATATCTTGGTAAACAATGCTGGAATTCCTGGAGTTAACGTGGACGGTGAGGCCCTGGTTGCTGCTAAAACTTTGGAAAATGGTGGCCAGATTGATTGGAGTAAAATAATAACTGAGAGCTATGAACAAACTGAAGCAGGTTTTAAAACAAACTACTATGGAGCCAAGGAATTAACCGAAACACTTATTCCTCTTCTCCGGCTTTCAAGTTCACCAACAATTGTCAATGTTTCCTCATTCATGGGAAGTTTAGAGAATATTCCGAAAGGATGGCCTAAGGAAGTACTAAGTGATGTTGAAAACCTTAATGAAGAAAAGATTGATGAAATTTTGAGCCAGTTTCTAAAGGATTTTAAGGAGGGTTCAATAGTAGAAAACAAAGGTTGGCCTATAAATATGTCTACATACGTTATCTCGAAAGCTGCTCTAAGTGCCTACACAAGAGTTCTGGCTAGAAAGTATTCATCAATATGCATCAATGCTGTTTGTCCTGGCTTTGTGAAAACAGATATAAACTACAATACAGGTTATTTGACACCTGATGAAGGTGCTGAATCGATTGTGAGGTTGGCATTGTTCCCTGGTGGGAGTCCTTCTGGCTGCTTTTTTGTTAGAAATGAAGAGAAACCATTTTGA 894 0.3814 MAETTKRYAVVTGANKGIGFAVCKQLASKGVTVVLTARDENRGLEAVDKLKQLYLPDLVIFHQLDVTDPASITSFADFIQNQFGKLDILVNNAGIPGVNVDGEALVAAKTLENGGQIDWSKIITESYEQTEAGFKTNYYGAKELTETLIPLLRLSSSPTIVNVSSFMGSLENIPKGWPKEVLSDVENLNEEKIDEILSQFLKDFKEGSIVENKGWPINMSTYVISKAALSAYTRVLARKYSSICINAVCPGFVKTDINYNTGYLTPDEGAESIVRLALFPGGSPSGCFFVRNEEKPF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00580 297 CDD carb_red_PTCR-like_SDR_c 7 297 IPR045313 GO:0016616
Vifa4g00580 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 209 237 IPR020904 GO:0016491
Vifa4g00580 297 FunFam (+)-neomenthol dehydrogenase 2 297 - -
Vifa4g00580 297 Pfam short chain dehydrogenase 8 170 IPR002347 -
Vifa4g00580 297 PRINTS Glucose/ribitol dehydrogenase family signature 222 241 IPR002347 -
Vifa4g00580 297 PRINTS Glucose/ribitol dehydrogenase family signature 241 258 IPR002347 -
Vifa4g00580 297 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vifa4g00580 297 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vifa4g00580 297 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 295 - -
Vifa4g00580 297 Pfam Enoyl-(Acyl carrier protein) reductase 208 260 - -
Vifa4g00580 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Vifa4g00580 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 222 241 IPR002347 -
Vifa4g00580 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vifa4g00580 297 Gene3D - 2 297 - -
Vifa4g00580 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 282 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00580 Vifa-Chr4 166165938 166167302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00580 2 176 Acyl Lipid Metabolism Gene Families AT1G63380 28.495 3.41e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00580 K15095 - gmx:100803877 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00580 4 166165938 166167302 Vifa4g00580 4 166165938 166167302 ECH