Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00578 ATGATTCAAACAGATTCAGCATCTATGGCAAACACAAAACAGAGATATGCAGTTGTTACAGGATCAAATAAAGGGATAGGATTGGAAACTGTTAAGAGATTAGCTTCAAATGGAGTCAAAGTTGTTCTTACTGCTAGAAATCAGAAAAGGGGTATTCAAGCTTTTGAGAAATTGAAGAAGGATTTTGGGTTTTGTAATCTGGTTGTTTTTCATCAACTTGATGTTACTGATCCTTTTAGTATTTCATCATTGGTTGAGTTTGTTGAGAATCAGTTTGGAAGACTTGATATCTTGGTGAATAATGCAGGAATCAATGGTTTTAACGCAGATGAGATGATTGAACCGATTATTAATTGGAGGGAATTGAGTCAAACTTACGACATGGCTGAAAAATGCATAATAACAAATTACTACGGCGCTAAAGAAACTACTGAGGCTTTTCTTCCTCTTCTAAAGTTATCTGATTCACCTGTGATCGTTAATGTTTCCTCTACAGCAGGCCAATTAAAGTACATATCAAACGAATGGGCGAATAATGTGTTAGATGACACTGAAAATCTCACCGAAGACCTAATAGACGAAGTACTAAAAGAGTTTCTGAAAGACTTCAAACAAGATTCACTCGAAAACAATGGTTGGCCAGTCTATCTTTCGGCCTATAAACTCTCGAAAGCAGCTGTGAATTCCTACACAAGACTTCTAGCTTATAGACATCCAAACATGTGTATTAATTGTGTTTGTCCTGGTTTTGTTAAAACAGATATGAATAGAAACACAGGTAATATAACTGTTGAAAATGGTGCTGCTAGTGTTGTGAGATTAGCATTAGTTTCTAGTGGTTCAAGTTCTGGTCACTTTTTTACTAGCCAAGATTTGTCCAGTTTTTGA 888 0.357 MIQTDSASMANTKQRYAVVTGSNKGIGLETVKRLASNGVKVVLTARNQKRGIQAFEKLKKDFGFCNLVVFHQLDVTDPFSISSLVEFVENQFGRLDILVNNAGINGFNADEMIEPIINWRELSQTYDMAEKCIITNYYGAKETTEAFLPLLKLSDSPVIVNVSSTAGQLKYISNEWANNVLDDTENLTEDLIDEVLKEFLKDFKQDSLENNGWPVYLSAYKLSKAAVNSYTRLLAYRHPNMCINCVCPGFVKTDMNRNTGNITVENGAASVVRLALVSSGSSSGHFFTSQDLSSF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00578 295 Pfam short chain dehydrogenase 16 172 IPR002347 -
Vifa4g00578 295 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Vifa4g00578 295 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Vifa4g00578 295 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Vifa4g00578 295 PRINTS Glucose/ribitol dehydrogenase family signature 239 256 IPR002347 -
Vifa4g00578 295 PRINTS Glucose/ribitol dehydrogenase family signature 220 239 IPR002347 -
Vifa4g00578 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 281 IPR036291 -
Vifa4g00578 295 FunFam (+)-neomenthol dehydrogenase 10 295 - -
Vifa4g00578 295 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 15 292 - -
Vifa4g00578 295 Gene3D - 5 295 - -
Vifa4g00578 295 Pfam Enoyl-(Acyl carrier protein) reductase 211 261 - -
Vifa4g00578 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Vifa4g00578 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 239 IPR002347 -
Vifa4g00578 295 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00578 Vifa-Chr4 165677442 165679250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00578 17 256 Miscellaneous Gene Families AT2G29150 28.395 1.89e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00578 K15095 - gmx:111064653 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00578 4 165677442 165679250 Vifa4g00578 4 165677442 165679250 ECH