Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00575 ATGGCAGAATCTGCACCACAAAGGTATGCAGTTGTGACTGGATCAAACAAAGGAATTGGATTTGAGATAGTTAAGCAGTTAGCTGAAGCTGGGATCAAAGTGGTGCTTACAGCAAGAGATGAGAAAAGAGGTCTTCAAGCATTGGAAACACTCAAAGCTTCTGGTTTATCTGATTTTGTTGTTTTTCATCAATTAGATGTGGCTGATGCTGCAAGTGTAGCTGCTCTAGCAGATTTTGTCAAATCACAGTTTGGGAAACTTGATATTCTGGTTAACAATGCAGGGATTAGTGGAACTGTAATTAATGACAAAGATTTAGCTACTGTGCTTATCTCTAACCCTGGAGCATTATCAGAAGATGAAAAGAAAAAGGCAGTGACTGAAACATATGAGTTAGCTGAAGAATGCTTGAAAATAAATTATTATGGTACTAAAATAACTACTGAATCATTTCTGGCACTGCTAAAGCTATCCGATTCGCCAAGAATTGTGAATGTATCATCCATTCTAGGGAAGTTAGAGCGCATACAAAACAAATGGGCTGAAAAAGTCTTCAGTGATGCTGATAACCTAACCGAAGAGAAAGTGGATGAAGTACTAAAGAAGTTTCTACAAGATTTCAAAGAAGGCGGGCCTAAACGCAGGGGTGCTTATGTCATATCTAAAGCTGCTGTAAATGCTTATACAAGAATTGCTGCTAAGAATTTTCCTACTGTAAGTATCAATAGTGTTTGCCCGGGTTATGTCATCACTGATATAACTGCAAATACCGGTATCTTAACTGCTGAAGAAGGTGCTGCTAGTGTTGTCAAGCTAGCACTACTTCCCAATGGTAGTCCGTCTGGCCGATTCTATAGCAGGACTGCAGTGTCTTCGTTTTGA 882 0.3934 MAESAPQRYAVVTGSNKGIGFEIVKQLAEAGIKVVLTARDEKRGLQALETLKASGLSDFVVFHQLDVADAASVAALADFVKSQFGKLDILVNNAGISGTVINDKDLATVLISNPGALSEDEKKKAVTETYELAEECLKINYYGTKITTESFLALLKLSDSPRIVNVSSILGKLERIQNKWAEKVFSDADNLTEEKVDEVLKKFLQDFKEGGPKRRGAYVISKAAVNAYTRIAAKNFPTVSINSVCPGYVITDITANTGILTAEEGAASVVKLALLPNGSPSGRFYSRTAVSSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00575 293 Pfam short chain dehydrogenase 9 175 IPR002347 -
Vifa4g00575 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 279 IPR036291 -
Vifa4g00575 293 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 290 - -
Vifa4g00575 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Vifa4g00575 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Vifa4g00575 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Vifa4g00575 293 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Vifa4g00575 293 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Vifa4g00575 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vifa4g00575 293 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vifa4g00575 293 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Vifa4g00575 293 FunFam (+)-neomenthol dehydrogenase 3 293 - -
Vifa4g00575 293 Gene3D - 2 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00575 Vifa-Chr4 165195738 165198639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00575 8 254 Acyl Lipid Metabolism Gene Families AT3G55290 26.848 2.56e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00575 K15095 - gmx:102663482 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00575 4 165195738 165198639 Vifa4g00575 4 165195738 165198639 ECH