Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00573 ATGGGAGAACCAACAGAAAGATATGCAGTGGTGACAGGCTCAAACAAAGGAATTGGGTTTGAGATAGTGAGGCAGTTAGCTTCAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAGAAAAGAGGTCTTCAAGCATTGGAAACACTCAAAGCTTCTGGTTTATCTCATTCTGTTGTTTTTCATCAACTAGATGTGGCTGATGCTTCAAGTGTAGCTACTCTAGCAGATTTTGTCAAATCACAGTTTGGGAAACTTGATATTCTGGTTAATAATGCTGGGATTGGTGGAGTTGAAATTAAAGATAGTAATTTATTCAGTTCAGCAATCATTACAAACGGGGCACTATCTGATGATGAATTGAGAAGTTCAATGACACAAACATATGAGTCAAGTAAAGAATGTTTGAAAATAAATTATGATGGAGCTAAAACAACATTTGAACATCTTGTTCCTCTCCTCCAGTTATCAGATTCAGCAAGAGTAGTCAATGTATCATCATCATTGAGCAAGATAGAGTGTGTATCAAATGAATGGGCTAAAGGAGTTTTCAGTGATGTTGAAAACCTTACAGAAGAGAGAATAGATGAAGTGTTAAAGGAATTTCTCAAGGATTTTGAACAAGGGTCTTTAGAAAGAAATGGTTGGCCTAGGTATTTGGCTGCCTATACTGTTGCTAAAGTTTCAATGAATGCTTATACAAGAATTATTGCGAAAAAATATCCGAATTTCTGCATCAATTGTGTTTGTCCTGGTTATGTGAAGACAGATATGACTGCGAATACCGGTTTCTACACTGCAAAAGAAGGCGCTGTGCATCCTGTTAGTTTAGCGGATACTCAAGCAAAGCAGGCTGTTAATATTGAAGGTGAAGTTCAAGAAGATGATCTCGTTGCAAGATCTGACAATATGCCATGCCACTGCCAAAAACTATTGGCAACTATGTTACATTTCTTGTTGAAGGTTTGCTTAGAAATTTAG 981 0.3741 MGEPTERYAVVTGSNKGIGFEIVRQLASAGIKVVLTARDEKRGLQALETLKASGLSHSVVFHQLDVADASSVATLADFVKSQFGKLDILVNNAGIGGVEIKDSNLFSSAIITNGALSDDELRSSMTQTYESSKECLKINYDGAKTTFEHLVPLLQLSDSARVVNVSSSLSKIECVSNEWAKGVFSDVENLTEERIDEVLKEFLKDFEQGSLERNGWPRYLAAYTVAKVSMNAYTRIIAKKYPNFCINCVCPGYVKTDMTANTGFYTAKEGAVHPVSLADTQAKQAVNIEGEVQEDDLVARSDNMPCHCQKLLATMLHFLLKVCLEI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00573 326 Gene3D - 3 296 - -
Vifa4g00573 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vifa4g00573 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Vifa4g00573 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vifa4g00573 326 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 282 - -
Vifa4g00573 326 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 210 238 IPR020904 GO:0016491
Vifa4g00573 326 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Vifa4g00573 326 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Vifa4g00573 326 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vifa4g00573 326 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Vifa4g00573 326 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vifa4g00573 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Vifa4g00573 326 Pfam short chain dehydrogenase 8 172 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00573 Vifa-Chr4 165126824 165128841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00573 10 263 Acyl Lipid Metabolism Gene Families AT1G24360 22.957 2.33e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00573 K15095 K26488 gmx:100801677 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00573 4 165126824 165128841 Vifa4g00573 4 165126824 165128841 ECH