Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00569 ATGTGGAAATTCGGCGTCGTTTCAGTCTCCAAACTCGCCAGATCGCGGCGTTTCTCCATCGCGATTCCCGGTCCTTGCATTGTTCATAAACGTGGTGCCGATATTCTTCACGATCCCTGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAAAGGGATAGATTGGGACTTCGTGGCCTTCTTCCTCCTCGTGTTATATCGTTTGAGCAGCAATATGATCGCTTTATGAATTCATACCGATCTTTGGAGAAGAATACTCAGGGACAACCAGAGAAAGTTGTTTCTCTGGCAAAATGGAGAATCTTAAATAGACTGCATGACAGGAATGAAATTTTGTACTACAGAGCTCTTATTGACAATATTAAAGAGTTTGCTCCAATAATATATACTCCCACAGTCGGATTAGTGTGCCAAAATTATTCAGGGTTATTTAGACGGCCACGTGGAATGTATTTTAGTGCCAAAGACAAAGGGGAGATGATGTCAATGATCTATAACTGGCCAGCTCACGAGGTAGACATGATTGTCTTGACAGATGGAAGTCGAATTCTTGGATTAGGTGATCTTGGAGTTCAAGGAATTGGAATACCCATTGGAAAACTTGATGTGTATGTCGCTGCTGCTGGTATCAACCCACAAAGAATACTTCCAGTCATGCTAGATGTTGGCACCAACAATCAAAAGCTACTTGAAGACCGCCTTTATTTAGGACTTCGGCAACCAAGATTGGAAGGTGAAGAGTATCTGTCAATTGTTGATGAATTCATGGAAGCAGTTCATGCTCGATGGCCCAAGGCCATTGTGCAGTTTGAAGATTTCCAAATGAAGTGGGCTTTTGAAACCCTAGAACGATATAAGAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCACTTGCTGGATTATTGGGAACAGTAAGATCTCAAGGTCGACCATTGTCTGATTTTGTGAACCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGGTTAGGGGTTCTGAAAATGGCCATCGAGGCAGTTGCAAGAATTTCTGGGTGCAGTGAAATAGCTGCCAAAAGTCAATTCTTTCTGATTGATAAAAATGGTCTAGTCACAACAGAAAGGAAAAATCTAGATCCAGCTGCAGCCGCATTTGCTAAAAATCCAAGAGACATAGATGGGCTTACCGAGGGTGCTAGTATAATCGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTAGGTTTGTCCGGTGTTGGTGGTATTTTCAATAAGGAGGTACTTAAGGCAATGAAAGAATCCGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACCTTGAATGCTGAGTGCACTGCTATTGATGCTTTTAATCACGTCGGGGAACATATAGTGTTTGCAAGTGGAAGCCCTTTCGAAAATGTAGATTTTGGTGATGGGAAAGTTGGGCATGTAAATCAAGCAAACAATATGTACCTTTTCCCAGGAATTGGTTTGGGAACACTTCTGTCAGGTGCTCATCTTATTACAGACGGAATGTTGCAGGCAGCTGCTGAACGCCTTGCTTCATACATGGCTGAGGAAGATGTCTTAAAAGGAATTCTATATCCATCCGTTAATAGCATAAGAGATGTTACAGCAGAGGTTGGAGCTGCTGTGCTTCGAGCAGCCGTTGAAGAAGATCTGGCAGAGGGACATGGTGAAGTAGGGGCTAGAGAACTCGCGCACATGTCAAAAGAGAAGACTGTGGAATATGTCCGACACAATATGTGGTATCCTGTGTATGCTCCACTTGTTCATGAAAGATAG 1812 0.4299 MWKFGVVSVSKLARSRRFSIAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSYRSLEKNTQGQPEKVVSLAKWRILNRLHDRNEILYYRALIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYKKRFCMFNDDIQGTAGVALAGLLGTVRSQGRPLSDFVNQKIVVVGAGSAGLGVLKMAIEAVARISGCSEIAAKSQFFLIDKNGLVTTERKNLDPAAAAFAKNPRDIDGLTEGASIIEVVKKVKPHVLLGLSGVGGIFNKEVLKAMKESVSTKPAIFAMSNPTLNAECTAIDAFNHVGEHIVFASGSPFENVDFGDGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAAAERLASYMAEEDVLKGILYPSVNSIRDVTAEVGAAVLRAAVEEDLAEGHGEVGARELAHMSKEKTVEYVRHNMWYPVYAPLVHER 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00569 603 Gene3D - 294 603 - -
Vifa4g00569 603 FunFam Malic enzyme 294 603 - -
Vifa4g00569 603 Pfam Malic enzyme, N-terminal domain 106 286 IPR012301 GO:0004471
Vifa4g00569 603 Gene3D - 30 293 IPR037062 GO:0004471
Vifa4g00569 603 SMART Malic_M_2 296 559 IPR012302 GO:0051287
Vifa4g00569 603 FunFam Malic enzyme 30 293 - -
Vifa4g00569 603 PRINTS Malic enzyme signature 208 230 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 292 308 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 326 342 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 267 285 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 172 201 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 435 451 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PRINTS Malic enzyme signature 112 136 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 PIRSF ME 8 602 IPR001891 GO:0004470|GO:0004471
Vifa4g00569 603 Pfam Malic enzyme, NAD binding domain 296 558 IPR012302 GO:0051287
Vifa4g00569 603 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 296 600 IPR036291 -
Vifa4g00569 603 SMART malic_2 106 286 IPR012301 GO:0004471
Vifa4g00569 603 PANTHER MALIC ENZYME-RELATED 25 597 - -
Vifa4g00569 603 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 18 295 IPR046346 -
Vifa4g00569 603 CDD NAD_bind_1_malic_enz 296 594 - -
Vifa4g00569 603 ProSitePatterns Malic enzymes signature. 292 308 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00569 Vifa-Chr4 164931053 164944111 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00569 K00028 - gmx:100811081 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00569 4 164931053 164944111 Vifa4g00569 4 164931053 164944111 ECH