Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00549 ATGGCTGCAACTGCCTCTGCTTCCGCCTCTGCTTCCGCCTCATTCTCCCGCTTCTCCGTCATCTCAAAACCACCTCCCCAACCGCAATTCATCCTCTTCACCTCCCCCAATCAAACCAAACCTCCTTTTTCTCGAACCACCGCAACCCGGTTCACATGTTCCGCCGGTCAGACCGGGCTATTCTCGAAACTAGGCCGGTTACTAAAGGAGAAAGCGAAGAGCGACGTAGAGAAGCTATTCTCCGGTTTCTCCAAGACTCGCAACAACCTCTCCGTCATCGATGAGCTTCTCCTGTACTGGAATCTCTCTGATACTGATAGAGTCCTCGATGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGGCCAAAAATTACTATTAAGATAGTGGAGAATTTGCGTCAGGATATACTTGCAGGGAAGCTTAAATCAGGGAGTGAGATAAAGGAAGCACTGAAGAAGAACGTTTTAGATTTGTTAAGCATTAAGGGAAGTAAAACTGAACTTCAACTTGGATTCAGGAAACCAGCCGTAATAATGATAATTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTCGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGCTAGAAATATGGGCTGAAAGGACCGGGTGTGAGATTGTTGTGGCGGAAACTGAGAAAGCCAAAGCATCAGCAGTGCTTTCAAAGGCTGTAAAAAGAGGAAAAGAGCTAGGTTATGATATTGTATTATGCGATACGTCTGGACGTTTACACACCAATTACAGGCTAATGGAAGAGTTGATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTACTGGTGCACCCAATGAGATCCTACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAGGCCAGAGAATTCAATGACGTTGTGGGTGTAACCGGTTTAGTTTTGACCAAACTGGATGGTTCTGCAAGAGGCGGCTGTGTGGTCAGTGTGGTTGATGAACTCGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCAGAAGCATTTGTCAATGCCATTTTTATGTAG 1137 0.4512 MAATASASASASASFSRFSVISKPPPQPQFILFTSPNQTKPPFSRTTATRFTCSAGQTGLFSKLGRLLKEKAKSDVEKLFSGFSKTRNNLSVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITIKIVENLRQDILAGKLKSGSEIKEALKKNVLDLLSIKGSKTELQLGFRKPAVIMIIGVNGGGKTTSLGKLAYRLKNGGAKILFAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASAVLSKAVKRGKELGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVVTGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00549 378 Gene3D - 66 166 IPR042101 -
Vifa4g00549 378 SMART AAA_5 175 348 IPR003593 GO:0016887
Vifa4g00549 378 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 50 377 - -
Vifa4g00549 378 Pfam SRP54-type protein, helical bundle domain 105 154 IPR013822 GO:0005525|GO:0006614
Vifa4g00549 378 Gene3D - 168 378 IPR027417 -
Vifa4g00549 378 SMART SRP54_N_2 79 160 IPR013822 GO:0005525|GO:0006614
Vifa4g00549 378 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 351 364 IPR000897 GO:0005525|GO:0006614
Vifa4g00549 378 Pfam SRP54-type protein, GTPase domain 176 377 IPR000897 GO:0005525|GO:0006614
Vifa4g00549 378 CDD FtsY 177 376 - -
Vifa4g00549 378 FunFam Cell division FtsY, chloroplastic-like protein 66 167 - -
Vifa4g00549 378 FunFam Signal recognition particle receptor FtsY 169 378 - -
Vifa4g00549 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 376 IPR027417 -
Vifa4g00549 378 SMART SRP54_3 176 378 IPR000897 GO:0005525|GO:0006614
Vifa4g00549 378 NCBIfam signal recognition particle-docking protein FtsY 105 377 IPR004390 GO:0006614
Vifa4g00549 378 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 76 153 IPR036225 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00549 Vifa-Chr4 155920408 155924604 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00549 K03110 - gmx:100791073 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00549 4 155920408 155924604 Vifa4g00549 4 155920408 155924604 ECH