Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00475 ATGGCTCTCACTTCTCAATCTCCATTCTCACGTCTAACCCAATTCAACAACACTAGTTCTCACACTTCCCCAACCGTTACTTCCCGCCAAATTATAACCAACAAAACCCTCTTCACTCTTTCTCTCACTAAACCAACTCCATCTTTCTCTGTAACAGCTTCTTCTTCTAACAACTCCCAACCCATGCTTCCCCCTTACAACGTCTTGATTACCGGCTCAACCAAAGGGATAGGGTTCGCTTTAGCTAAAGAGTTTCTAAAAGCCGGCGACAATGTCTTGGTTTGCTCAAGATCAGATGAAAGGGTAGAGACTGCTCTCAAGTGCTTGAGAGAAGAATTTGGAGAGCAGCATGTGTGGGGCTCTACATGCGATGTCAAAAATGGAGAGGACGTCAAGAAATTAGTTTCATTTGCTAAAGAAAAACTGAAATACATTGATATATGGATCAATAATGCTGGATCAAATGCATATAGCTACAAGCCACTTGCTGAAGCATCAGATGAGGATCTTATTGAGGTGGTTACAACAAACACACTTGGCTTGATGATATGCTGTCGAGAGGCAATAAAGTTGATGGTGGGCCAACCTCGCGGAGGACATATTTTCAATATTGACGGAGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCGTATGGAGCAACAAAGAGAAGCGTGGTTCATTTGACTAAGTCATTACAGGCCGAATTGCAGATGCAAGATGTTAAAAACGTCATGGTTCACAATCTTTCGCCAGGAATGGTTACAACTGATCTTCTCATGTCTGGTGCCAATACAAAACAGGCAAAGTTTTTCATTAATGTCTTGGCTGAACCAGCCGAAGTGGTTGCAGAATACTTAGTTCCGAACATTAGATCTATCCCTACCAACAGATCAATGAAGCCGACATACATCCGGTTCCTCACGGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTTGCATTTGGGGCAAGGAGGAACCGGTACATTATCGAAGATTGA 1008 0.4296 MALTSQSPFSRLTQFNNTSSHTSPTVTSRQIITNKTLFTLSLTKPTPSFSVTASSSNNSQPMLPPYNVLITGSTKGIGFALAKEFLKAGDNVLVCSRSDERVETALKCLREEFGEQHVWGSTCDVKNGEDVKKLVSFAKEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKLMVGQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPTNRSMKPTYIRFLTGLKAYSQIFSRFAFGARRNRYIIED 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00475 335 MobiDBLite consensus disorder prediction 1 27 - -
Vifa4g00475 335 Gene3D - 60 306 - -
Vifa4g00475 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 207 IPR002347 -
Vifa4g00475 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 154 IPR002347 -
Vifa4g00475 335 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 220 239 IPR002347 -
Vifa4g00475 335 Pfam short chain dehydrogenase 68 263 IPR002347 -
Vifa4g00475 335 PRINTS Glucose/ribitol dehydrogenase family signature 193 209 IPR002347 -
Vifa4g00475 335 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Vifa4g00475 335 PRINTS Glucose/ribitol dehydrogenase family signature 67 84 IPR002347 -
Vifa4g00475 335 PRINTS Glucose/ribitol dehydrogenase family signature 220 239 IPR002347 -
Vifa4g00475 335 PRINTS Glucose/ribitol dehydrogenase family signature 143 154 IPR002347 -
Vifa4g00475 335 CDD SDR_c 68 289 - -
Vifa4g00475 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 286 IPR036291 -
Vifa4g00475 335 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 54 332 - -
Vifa4g00475 335 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 207 235 IPR020904 GO:0016491
Vifa4g00475 335 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 63 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00475 Vifa-Chr4 132818825 132824526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00475 68 260 Acyl Lipid Metabolism Gene Families AT1G24360 31.818 9.90e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00475 K13606 - gmx:100797874 524.242