Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00261 ATGAACGAACAAAACATCCACCCGACTCTTTTCACTTACAACTCCCTTCTTAACGGACTCGTTGGTTCCTCTTTTATCGAATCGGCCGAGCGTGTTTTTGTCGCCATGAAAGAAGGAAGAATAAAGCCTGATGTTGTAACCTACAATACTTTGATCAAAGGGTATTGTAAGATTGGGAAAACACGAAAGGCGACTGAGATGGTTCGCGAAATGGAGGTAATTAACTTGGAGCCTGATGTTGTTACTTATATGACAATAATGCAGGCTTGTTATTCTGAAGGGGATGTTGATTGTTGTTTGAGTCTTTACCATGAGATGGAGGATAAGGGATTTCAAGTTCCTTCTCATTGTTATACTTTGCTCATATGCGGGCTTTGTAAGACGGGGAAGGTTTTAGAAGCTTATGCTTTGTTTGAGAATATGCTTAGAAATGGTTGTAAGGGTAATAAGGCTGTTTACACTGCTTTGATTGATTGTTATGGGAAGAGTGGGAATTCTGATGGGGCTTTAAGGTTGTTTGAGAGGATGAAAATGGATGGGATTGAGCCTGATGAGGTTACTTATGGTGCTATTGTTAATGGGTTATGTAAGAGTGGCAGAGTAGAGGAAGCTTTGGGTTATTTTCGGTTTTGTAATGAGAATGCTGTTGTTGTCAATGCTGTTTTTTATTCTAGTTTGATTGATGGACTTGGAAAGGCGGGAAGGGTGGATGAAGCTGAGAAGGTGTTTGATGAAATGGCTAAGAAGGGGTGTCTGCCGGATTCATATTGCTACAATGCGCTCATCGATGGACTGTGTAAGTGTGGGAGGATAGACGATGCTTTAGTGCTGTTTAAGAGGATGGAGTGTGATGGTTGTGAGCATACTGTGTATACGTTTACTATACTTATCAGTGAGCTTTTCAGGGTGCATAGGAATGAAGAAGCCGTCAAGATGTGGGATTTGATGATTGACAAAGGGATAACGCCGAACGTTGCTTGTTTTAGGGCTTTTTCAATTGGAATGTGTCTTTCAGGAAAAGTTGCGAGGGCTTGTAAAGTGCTGGACGAGCTTGCACCTATGAGGGTTGTTCTTGAAACGGCTTATGAAGATATGATTGGAGCGCTGTGTAAAGCTGGTCGTGTGAAGGAGGCTTGTAAGTTGGCTGATGGAATTGTGGATAGGGGTAGAGAAATACCTGGGAAGATTAGAACTGTGATGATTCATTCCTTAAGGAAAGCTGGGAATGCTGATTTGGCTATCAAGTTGATGCATAGCAAGATTGGTATTGGATATGATCGAATGCGGAGCGTTAAAAAGAGAGTCAAGTTTCAAACCCTTGTTGACAACTGA 1332 0.4174 MNEQNIHPTLFTYNSLLNGLVGSSFIESAERVFVAMKEGRIKPDVVTYNTLIKGYCKIGKTRKATEMVREMEVINLEPDVVTYMTIMQACYSEGDVDCCLSLYHEMEDKGFQVPSHCYTLLICGLCKTGKVLEAYALFENMLRNGCKGNKAVYTALIDCYGKSGNSDGALRLFERMKMDGIEPDEVTYGAIVNGLCKSGRVEEALGYFRFCNENAVVVNAVFYSSLIDGLGKAGRVDEAEKVFDEMAKKGCLPDSYCYNALIDGLCKCGRIDDALVLFKRMECDGCEHTVYTFTILISELFRVHRNEEAVKMWDLMIDKGITPNVACFRAFSIGMCLSGKVARACKVLDELAPMRVVLETAYEDMIGALCKAGRVKEACKLADGIVDRGREIPGKIRTVMIHSLRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLVDN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat family 151 197 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat family 43 90 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat family 219 267 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat family 116 149 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vifa4g00261 443 Pfam Pentatricopeptide repeat domain 277 330 IPR002885 -
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 282 356 IPR011990 GO:0005515
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 212 281 IPR011990 GO:0005515
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 359 420 IPR011990 GO:0005515
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 143 211 IPR011990 GO:0005515
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 73 142 IPR011990 GO:0005515
Vifa4g00261 443 Gene3D Tetratricopeptide repeat domain 1 72 IPR011990 GO:0005515
Vifa4g00261 443 SUPERFAMILY HCP-like 83 280 - -
Vifa4g00261 443 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vifa4g00261 443 PANTHER ATPASE EXPRESSION PROTEIN 3 117 417 - -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 11 45 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 223 255 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 152 185 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 81 112 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 117 149 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 291 325 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 46 79 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 186 209 IPR002885 -
Vifa4g00261 443 NCBIfam pentatricopeptide repeat 256 288 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat 11 38 IPR002885 -
Vifa4g00261 443 Pfam PPR repeat 365 386 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00261 Vifa-Chr4 52755043 52756374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00261 12 425 Glycosyltransferase AT1G05670 27.470 2.24e-49 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00261 - - lja:Lj0g3v0129989.1 744.962