Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00103 ATGTACGGCGGCGATGAAGTTTCAGCTATAGTGATTGATCTGGGTTCACATACGTGTAAAGCTGGTTATGCCGGAGAAGATGCTCCCAAGGCCGTGTTTCCTTCTGTTGTTGGAGCTATTGATCAAATGGATGTTGATGAATCGGATGATCCTGAAAAGAACCCTGGCTCTGGTGAATCGAAGAACAATAGTAGAAATGTTGAGGGCGATAAAGCCAAGGGAAAGAGAAAATTGTATGTAGGATCTCAGTCCTTGGGCTACCGTAGAGATTTTATGGAGGTACTGTCTCCACTGAAGGATGGACTTGTTGCTGACTGGGATATTGTTGACAGCATTTGGGATCATGCCTTCAGGGAGTGCCTATTGATTGATCCTAAAGAACATCCCATGCTCCTGGCAGAGCCTTCTTCCAATGCTCCACAACAGAGAGAAAGGGCAGCAGAGCTTATGTTTGAGAAATACAAAGCGCCTGCATTATTTTTGGCAAAAAATGCTGTTCTGACCTCTTTTGCATCAGGGCGTGCCACATCATTAGTTGTTGATAGTGGTGGAGGATCAACTACAGTTGCACCGGTTCATGATGGCTATGTTCTTCAGAAGGCTGTGGCAACCTCTCCAATCGGAGGAGAATTTCTTACAGACTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTGTGATGAAACCTAGGTATTCCTTTAAGAGGAAGGAAATACGCCCTGGAGAGTTTCAGACGGTAGATTTGGATTTTCCAAATACAACTGAAAGCTACAAACTCTACTCCCAGAGGGCGATTGCTAGTGATATCAAGGAATGTGTGTGCCGCGCCCCAGATACTCCATATGATGAGAGTGCATATTCCAACATCCCAACAACCTCGTATGAGCTTCCTGATGGCCAGACAATTGAAGTTGGAGCTGATAGATTTAAGATTCCAGATGTTCTTTTCAATCCATCCGTGGCTCAGTCAATTCCAGGCATGGAGAGCTTTGCAGAAATTGCTCCTTCAGTTCGAGGGCTTCCTCAAATGGTTATTGAAAGCATTAATAAGTGTGATGTTGACATTCGAAGAGAATTGTTTAGTAGCATACTGCTTGCTGGCGGCACAGCTTCAATGCAACAACTGAAGGAACGCCTTGAGAAAGATTTGCTAGAGGAATCCCCTCAGGCTGCTAGAGTAAAGGTATTGGCCAGTGGTAATGCTACTGAAAGGAGGTTTAGTGTCTGGATAGGAGGCAGTATACTGGCTTCTCTTGGCTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCTTGA 1335 0.4487 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDPEKNPGSGESKNNSRNVEGDKAKGKRKLYVGSQSLGYRRDFMEVLSPLKDGLVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNAPQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIVMKPRYSFKRKEIRPGEFQTVDLDFPNTTESYKLYSQRAIASDIKECVCRAPDTPYDESAYSNIPTTSYELPDGQTIEVGADRFKIPDVLFNPSVAQSIPGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00103 444 Gene3D Actin; Chain A, domain 4 209 322 - -
Vifa4g00103 444 MobiDBLite consensus disorder prediction 44 74 - -
Vifa4g00103 444 Gene3D - 1 182 - -
Vifa4g00103 444 CDD NBD_sugar-kinase_HSP70_actin 10 203 - -
Vifa4g00103 444 SUPERFAMILY Actin-like ATPase domain 173 443 IPR043129 -
Vifa4g00103 444 FunFam Actin-related protein 4 1 182 - -
Vifa4g00103 444 Pfam Actin 4 443 IPR004000 -
Vifa4g00103 444 SUPERFAMILY Actin-like ATPase domain 5 180 IPR043129 -
Vifa4g00103 444 Gene3D - 183 383 - -
Vifa4g00103 444 Gene3D - 388 444 - -
Vifa4g00103 444 SMART actin_3 7 444 IPR004000 -
Vifa4g00103 444 FunFam actin-related protein 4 386 444 - -
Vifa4g00103 444 PANTHER ACTIN 9 437 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00103 Vifa-Chr4 12214651 12224080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00103 1 443 Miscellaneous Gene Families AT3G53750 36.323 2.14e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00103 K11340 - gmx:100795390 817.764