Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00093 ATGGAGCCATCAGCCGAAACAAACAACGAGGCAGCGGAAGAGCAGGTGGTGACTCCATGGGAGGTTTCCGGCAAAGACGGAGGAAAAATCGATTACGACAAACTGATTGACCGTTTCGGTTGTCAAAGGATCGATCAATCTCTCATTCAACGCGTCGAGCATCTCACTTCTCTCCCCGCTCACGTCTTCCTCCGCCGCGGCGTTTTCTTCGCTCACCGTGATTTTTCTGAAATTCTGAATGCATATGAAAAAGGAGATAAGTTTTACCTATATACAGGACGTGGACCTTCTTCCGAAGCTTTGCATTTAGGTCATTTGATTCCGTTCATGTTCACCAAGTATTTGCAAGATGCTTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGATGAGAAGTTCTTGTGGAAGAATTTGACTGTAGATGAGTGTCGAAGACTTGCCCGCGAGAATGCCAAGGATATTATTGCTTGCGGTTTTGATATATCAAAGACATTCATCTTCTCTGATTTCGATTTTGTTGGCGGTGCCTTCTACAGAAACATGGTAGAGGTTGCAAAGCGTGTTACTTATAACCAGGCTGTTGGCATTTTTGGGTTCACTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGTTCCATCATTTCCTAGTTCATTTCCTCATCTATTTTCTGGGAAAGATAATCTCCGTTGTTTAATTCCTTGTGCAATAGACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTAAACTTGGATATCACAAGCCTGCTTTGATTGAATCATTATTCTTTCCCGCATTACAGGGTGAAACAGGAAAAATGTCTGCCAGTGATCCCAACTCCGCAATATATGTTACTGATTCTGCAAAAGATATAAAGAATAAGGTAAACAGACATGCATTTTCTGGTGGGCAAGATTCTGTAGAGAAACATAGGCAGTTAGGGGCAAATATCGAGATAGATATACCTGTCAAATACCTTTCTTTTTTCTTGGAAGATGATGCAGAACTTGAACACATAAAGAAGGAGTATGGAGCGGGACGCATGCTAACTGGTGAGGTGAAGCAGCGCCTAGTTCAAGTTTTGACTGAACTAGTAGAGAGGCATCGGACAGCTCGAGCTAATGTTACCGATGAGATGGTTGATGCATTTATGGCAGTCAGGCCACTTCCTTACATGTTTGACTGA 1206 0.427 MEPSAETNNEAAEEQVVTPWEVSGKDGGKIDYDKLIDRFGCQRIDQSLIQRVEHLTSLPAHVFLRRGVFFAHRDFSEILNAYEKGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLTVDECRRLARENAKDIIACGFDISKTFIFSDFDFVGGAFYRNMVEVAKRVTYNQAVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDNLRCLIPCAIDQDPYFRMTRDVAPKLGYHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNRHAFSGGQDSVEKHRQLGANIEIDIPVKYLSFFLEDDAELEHIKKEYGAGRMLTGEVKQRLVQVLTELVERHRTARANVTDEMVDAFMAVRPLPYMFD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00093 401 CDD TrpRS_core 89 371 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 FunFam Tryptophan--tRNA ligase, cytoplasmic 284 401 - -
Vifa4g00093 401 Pfam tRNA synthetases class I (W and Y) 241 371 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa4g00093 401 PRINTS Tryptophanyl-tRNA synthetase signature 235 256 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 PRINTS Tryptophanyl-tRNA synthetase signature 153 172 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 PRINTS Tryptophanyl-tRNA synthetase signature 279 289 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 PRINTS Tryptophanyl-tRNA synthetase signature 101 117 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 Gene3D HUPs 7 282 IPR014729 -
Vifa4g00093 401 SUPERFAMILY Nucleotidylyl transferase 14 394 - -
Vifa4g00093 401 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 96 106 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa4g00093 401 Gene3D - 283 400 - -
Vifa4g00093 401 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 5 398 - -
Vifa4g00093 401 NCBIfam tryptophan--tRNA ligase 87 392 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vifa4g00093 401 FunFam tryptophan--tRNA ligase, cytoplasmic 10 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00093 Vifa-Chr4 11732237 11743456 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00093 K01867 - gmx:100787194 712.22