Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00075 ATGGCGACAATTAACCCTTTTGATTTGTTGGGTGACGATGCTGAAGATCCTTCACAGTTGATTGCCGCCGAACAACTCAAAGCCGCCGCTGCGGCCGCCGCCGCTCCCAAAAAGGGTTCCGAACAAGCCAAACAACTTGCTCCCAAAAAGGCTGCTCTGTTGCCTTCCAAACCACTTCCTCCTTCTCAGGCTGTGAGAGAGGCAAGAAACGAACCTTCTCGTGGAGGCCGTGGAGGCGGACGAGGATTTGGACGTGGTCGTGGTGGAGGCGGCGGCTTTGGACGTGACTTTACCAATGACGATAACTCCTCTTCACTGCCTGCTCCTCCGGCTAATCAAGGTTCTTTTGAAGGAGATTCTGGGAATCCATCTGAAAGGCGTGGTTATGGTGCACCTCGTGCTCCTTACCGCGTTGGCGGAGGTGGTGGACGCCGTGGAGGATTTAGCAACGGTGAAGCTGCTGAAGAAGGACGTCCAAGAAGGACATTTGATCGCCACAGTGGGACTGGACGAGGAGGTGGATTCAAACGTGAAGGTGCTGGACGTGGAAATTGGGGAACTCAGTCTGATGAAATTGCCCAGGTGACTGACGAAGTTGCTAATGAAACTGAAAAGAATGTGGCTGAGGAGAAGCCTGCTGGCGAAGAAGATGCAGTCGCCGAAGGAAACAAAGAAACACCTGCTAATGAAGCAGAAGAAAAGGAGCCTGAGGACAAGGAGATGACATTAGAAGAATATGAGAAAGTGTTGGAAGAGAAAAGGAAAGCCCTGCAGGCACTTAAGGTTGAAAGCAGAAAGGTGGACACTAAAGAGTTTGAATCCATGAAGCCACTTTCATGCAAGAAAGAAAATGATGAGATCTTTGCTAAACTGGGATCTGACAAGGACAAACGCAAAGACGCCTTTGAGAAGGAGAAGGCAAAGAAAGCTCTGAGCATCAATGAGTTTCTGAAACCTGCTGAAGGAGAGAAGTATTACAACCCAGGTGGGCGTGGTGGTCGCGGACGTGGTGGACGTGGTGGTTCAAGGGGAGGAGGAGGTTATGGTGGAAATGCATACGGCAATATGCCAGCCCCATCTATTGAGGATCCTGGTCAATTCCCAACTTTAGGTGGTGGCAAGTGA 1125 0.5067 MATINPFDLLGDDAEDPSQLIAAEQLKAAAAAAAAPKKGSEQAKQLAPKKAALLPSKPLPPSQAVREARNEPSRGGRGGGRGFGRGRGGGGGFGRDFTNDDNSSSLPAPPANQGSFEGDSGNPSERRGYGAPRAPYRVGGGGGRRGGFSNGEAAEEGRPRRTFDRHSGTGRGGGFKREGAGRGNWGTQSDEIAQVTDEVANETEKNVAEEKPAGEEDAVAEGNKETPANEAEEKEPEDKEMTLEEYEKVLEEKRKALQALKVESRKVDTKEFESMKPLSCKKENDEIFAKLGSDKDKRKDAFEKEKAKKALSINEFLKPAEGEKYYNPGGRGGRGRGGRGGSRGGGGYGGNAYGNMPAPSIEDPGQFPTLGGGK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00075 374 SMART HABP4_PAI_RBP1_2 159 268 IPR006861 -
Vifa4g00075 374 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 372 IPR039764 GO:0003723
Vifa4g00075 374 MobiDBLite consensus disorder prediction 321 374 - -
Vifa4g00075 374 MobiDBLite consensus disorder prediction 31 241 - -
Vifa4g00075 374 MobiDBLite consensus disorder prediction 187 201 - -
Vifa4g00075 374 MobiDBLite consensus disorder prediction 97 120 - -
Vifa4g00075 374 Pfam Stm1 1 79 IPR019084 -
Vifa4g00075 374 Pfam Hyaluronan / mRNA binding family 159 267 IPR006861 -
Vifa4g00075 374 MobiDBLite consensus disorder prediction 154 172 - -
Vifa4g00075 374 Coils Coil 243 263 - -
Vifa4g00075 374 Gene3D - 157 271 - -
Vifa4g00075 374 MobiDBLite consensus disorder prediction 202 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00075 Vifa-Chr4 8053006 8055980 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00075 K13199 - gmx:100791259 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00075 4 8053006 8055980 Vifa4g00075 4 8053006 8055980 ECH