Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00074 ATGCCCAGCCAAATTTTCTCAATATTTGTTGCGGAAGCGAAAGTAGAGTCTCCTAGATCAGGAGCTCTGATGTCATGTATTGATGTTACTGCCCATGATATACGATTTGTAGAGGACAACTGGGAGAGCCCGGTTCTTGGTGCCTGGGGTTTGGGATGGGAAATCTGGATGGATGGAATGGAGATTACTCAGTTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCAGTATCGGTAGAAATAACTTATGGCCTGGAGCGTATCCTCATGTTACTGCAGGGAGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATTACTTATGGAGAGCTATTCTTGGAGAATGAAAAGGAAATGAGTGCATATTATTTGGAGCATGCCAGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCATCGTTTACTTTCTTCTGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACGTCTCATACTTTTAATATTTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGTTATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCCCAACTTTGGTTGAAGACCAGGGAGATGCTTGGCTACCCCCTTGGTTTCATCTCCGAACCTGATCTGTCTGTGGTGCCAAAGGATGTTTTGGAGGCCGCTTGTGAAAAGGTGCATGATCATGCAAGAGCATTTGTTCTTGAAATTGGAACTGAAGAAATGCCACCTCATGATGTTGTTGATGCAAGCAAGCAACTGAAAGACTTACTGGTGCAACTACTGGATCGACAAAGGTTAAAGCATGGTGAAGTGCAGGTTTTTGGCACTGCGCGGAGACTAGTGGTTTCTGTTGAAAATCTTTACGCGAAACAAACAGAGCAGGAGGTTGAGGTTCGAGGTCCCCCTGTTTCAAAAGCATTTGATCAGGAAGGGAATCCAACAAAGGCTGCTGAGGGGTTTTCCCGTAAATACTCTGTTCCGCTGGACTTGGTATACAGAAAGATTGATGGGAAAACAGAATATCTATATGCTCGAATAAAAGAGTCTTCAAGACATGCTGTGGAGGTTTTATCTGAAGATTTGCCTGCCACTATTGCAAAAATATCATTTCCGAAGACAATGCGTTGGAATTCACAGGTGATGTTTAGCAGGCCTATCCGATGGATTTTGGCCTTGCATGGAGATGTTGTGGTCCCATTTATGTTTGCTGGGGTAGTGAGTGGAAACTTGTCGTGCGGTCTTCGTAATACTGCATCAGCCGTTGTCCAGATAGAAAACGCAGAATCATATTCAGTTGCAATGGAAAATGCGGGAGTCAATGTTGTAGTTGAGGACCGTAAGAAAAAAATTGTTGAGCAATCTAATACATTAGCAGAGAGTGTAAATGGTCAAATTCTGATTCCGAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGAACTTTTGACAATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGCGATACAAATGGACAACTGCTGCCTTATTTTATTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCAGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTTGGAACCATGCTGGATAAAACGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCATCATGGATATCAATGAAGATCTGCAACAAATTATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTGCCACATCCGTTGTCACTGAGTTTACCGCACTTTCAGGAGTAATGGGGCGTCACTATGCCCTTCGAGATGGATACTCAGAGCAGACTGCAGAAGCCTTGTTTGAGATCACACTTCCTAGATTTTCTGGGGACATACTTCCTAATAGCGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTACCGCTGGCTGTCAACCTAGTTCCACAAACGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAATTGTTGGTGGAAAAGAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCCGCAGATGTCCAGCCAATTAAAGTAAATTCTCAAGTAATAGATGACGTACGTCAATTTGTCACTCGAAGATTAGAGCAATTTCTGGTGGACAAGGGAGTGAGTGCAGAAATTGTTCGCTCTGTCCTTGCAGAGAGGGCTAATTTTCCCTGTCTAGCAGCGAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGACCAACTCGAATTGTCCGAGGAAAGGAAAATGAGCTTCATACGGAGGTGGATGAGGCTGCCTTCGAGACAAATGAAGAAAGAGTTTTGTGGAACACATTTTTGTCAGTTAAAAAGAGTATCAATCCTGGTCTTGACATTGATGATTTTATTGAAATTTCATACCAGCTTGTACAACCACTAGATGATTTCTTTAATAATGTCTTCGTAATGGTGGATGATGCCAAGATCAGAAAAAACAGACTAGCTCTGCTAAAAGGAATTGCTGAACTCCCTAATGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA 2772 0.4203 MPSQIFSIFVAEAKVESPRSGALMSCIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHLQKHFDFFEEESHRLLSSGLAIPAYDQLLKTSHTFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGYPLGFISEPDLSVVPKDVLEAACEKVHDHARAFVLEIGTEEMPPHDVVDASKQLKDLLVQLLDRQRLKHGEVQVFGTARRLVVSVENLYAKQTEQEVEVRGPPVSKAFDQEGNPTKAAEGFSRKYSVPLDLVYRKIDGKTEYLYARIKESSRHAVEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVVSGNLSCGLRNTASAVVQIENAESYSVAMENAGVNVVVEDRKKKIVEQSNTLAESVNGQILIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKELLTMVMQKHQKYFAVCDTNGQLLPYFIAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFREQLKNILFHEKLGTMLDKTTRVENMVTKLSCIMDINEDLQQIIREAASLAMSDLATSVVTEFTALSGVMGRHYALRDGYSEQTAEALFEITLPRFSGDILPNSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAADVQPIKVNSQVIDDVRQFVTRRLEQFLVDKGVSAEIVRSVLAERANFPCLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKENELHTEVDEAAFETNEERVLWNTFLSVKKSINPGLDIDDFIEISYQLVQPLDDFFNNVFVMVDDAKIRKNRLALLKGIAELPNGIADLTLLPGF 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00074 923 SUPERFAMILY HD-domain/PDEase-like 569 703 - -
Vifa4g00074 923 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 596 885 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 32 202 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 FunFam Glycine--tRNA ligase, chloroplastic/mitochondrial 2 131 210 - -
Vifa4g00074 923 Gene3D Bira Bifunctional Protein; Domain 2 19 130 IPR045864 -
Vifa4g00074 923 PRINTS Glycyl-tRNA synthetase alpha subunit signature 167 183 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 PRINTS Glycyl-tRNA synthetase alpha subunit signature 82 97 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 PRINTS Glycyl-tRNA synthetase alpha subunit signature 59 79 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 PRINTS Glycyl-tRNA synthetase alpha subunit signature 33 57 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 SUPERFAMILY Class II aaRS and biotin synthetases 27 206 IPR045864 -
Vifa4g00074 923 PANTHER GLYCYL-TRNA SYNTHETASE 26 921 IPR006194 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 Pfam Glycyl-tRNA synthetase alpha subunit 27 206 IPR002310 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 NCBIfam glycine--tRNA ligase subunit beta 242 919 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 Pfam DALR anticodon binding domain 816 909 IPR008909 GO:0004814|GO:0005524|GO:0006420
Vifa4g00074 923 Pfam Glycyl-tRNA synthetase beta subunit 242 786 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vifa4g00074 923 Gene3D Class II aaRS and biotin synthetases; domain 2 131 210 - -
Vifa4g00074 923 Hamap Glycine--tRNA ligase beta subunit [glyS]. 239 920 IPR015944 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00074 K14164 - gmx:100787365 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00074 4 8011428 8027984 Vifa4g00074 4 8011428 8027984 ECH