Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00071 ATGAACGGCGAAGAAGAAGAAGAAATAGCTGAAGAAGTTGAAGCCATGAAATCCGTTTATGAAAGCGATTGCACCATTCTCCATTCCTTTCCTCCTCACTTCCGTCTATCCCTCAAACCCAGAACCGCCGATGTTTCCTCTCACCAGTTTGTAGAAATTGTTCTTGAGGTACATGCAACTCCACAGTATCCAAAAGAACCACCTTGTGTTGCTCTTGTGGATTGCAAGGGTTTGGATCAATATAGACAAAAGCATTTATTGAATCATATAGAAAATAAAGCCAATGAGCTTTCTCCTGGATTAATGCTTGTAGCTCTTTGTGAGGAGGCTGTAGACAAACTCTCAGATATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCATTGGTCACAGAAGATCACCAACGTGAAACCTTGCCTTTTATGAAGTTAATGTCTTGCTTTCACTGTTTTCACAGTGAATGTATCATTAGATGGTGGAATTGGCTCGAGAGTTCCAAACAAACAGGGTCTTCCAATTCAGATAATGCAACAGCTCATCGTAACCGGGATAATCATGAAAAATTGGAAGAGGGTGCTGGAAACTGCCCTGTCTGTCGCAAACCTTTTCATGCCAAAGATTTGGACCATGTGCTTGACCTAGTTGGCTCACATTCTTCTAGAGAGAGTTTGAACAACGAAGTCGATATTGAGGAAAACATCCTTCAATCTGAAGAGGAGATAATCAGAAAACAGAGGTTTGAATCCATCTTAAGTTTACAGAAGGAGAACAATGGTTTGATTGAACCCAAAAAAGATATTGTAATATTGCCTGGTATGTATCTTCAACAACCGGTTGCAGTGCCCGACTCCACGTCAACCAAGGAACCTGATGAGACTGAACAACATGTAAGAGATCCACCTGCAGTTTTGTCTGGAAAACATGTTAGTGGGACCTCAAATGGACCTAGTTCTAGTGGGAACAGGAATTTTGGTGCAAGGAAGCATAGACCAAGAGGTGATCATCATCACTCTAGTTCGACTGCAAGACATCCAAGAAAACCAGTCCAACAATGGGTGGTTCGAAGAGATACTCCTAGCAATAAGCAATAG 1098 0.4162 MNGEEEEEIAEEVEAMKSVYESDCTILHSFPPHFRLSLKPRTADVSSHQFVEIVLEVHATPQYPKEPPCVALVDCKGLDQYRQKHLLNHIENKANELSPGLMLVALCEEAVDKLSDMNHPDGDCPLCLFPLVTEDHQRETLPFMKLMSCFHCFHSECIIRWWNWLESSKQTGSSNSDNATAHRNRDNHEKLEEGAGNCPVCRKPFHAKDLDHVLDLVGSHSSRESLNNEVDIEENILQSEEEIIRKQRFESILSLQKENNGLIEPKKDIVILPGMYLQQPVAVPDSTSTKEPDETEQHVRDPPAVLSGKHVSGTSNGPSSSGNRNFGARKHRPRGDHHHSSSTARHPRKPVQQWVVRRDTPSNKQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00071 365 ProSiteProfiles Zinc finger RING-type profile. 124 202 IPR001841 -
Vifa4g00071 365 SMART ring_2 124 201 IPR001841 -
Vifa4g00071 365 MobiDBLite consensus disorder prediction 309 326 - -
Vifa4g00071 365 MobiDBLite consensus disorder prediction 327 345 - -
Vifa4g00071 365 Pfam RWD domain 7 112 IPR006575 GO:0005515
Vifa4g00071 365 SUPERFAMILY RING/U-box 117 208 - -
Vifa4g00071 365 Coils Coil 223 243 - -
Vifa4g00071 365 FunFam eIF-2-alpha kinase GCN2 2 123 - -
Vifa4g00071 365 MobiDBLite consensus disorder prediction 283 365 - -
Vifa4g00071 365 FunFam RWD domain-containing protein 120 217 - -
Vifa4g00071 365 MobiDBLite consensus disorder prediction 172 193 - -
Vifa4g00071 365 Gene3D Ubiquitin Conjugating Enzyme 2 119 IPR016135 -
Vifa4g00071 365 ProSiteProfiles RWD domain profile. 11 117 IPR006575 GO:0005515
Vifa4g00071 365 SUPERFAMILY UBC-like 5 113 IPR016135 -
Vifa4g00071 365 SMART RWD2001b 11 117 IPR006575 GO:0005515
Vifa4g00071 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 216 IPR013083 -
Vifa4g00071 365 PANTHER RING FINGER PROTEIN 25 2 347 IPR039133 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00071 Vifa-Chr4 7937316 7941448 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00071 K10640 - gmx:100791789 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00071 4 7937316 7941448 Vifa4g00071 4 7937316 7941448 ECH