Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00048 ATGGATGTTTTCGACGGAAACAAATCCCTCAACACAATTCTCCTCCTCATCACAACCATAATCGTCGCAAAACTCATTTCATCATTCATCATCCCCAAATCCCGCAAACGCCTCCCCCCAATTCTTCCAGGATGGCCCATCATCGGCGGCCTCTTCCGTTTCCTCAAAGGTCCAATCTTTATGCTCCGTGAGCAATACCCTAAACTCGGAGCCGTTTTCACCTTGAGAATCTTCCACAAAAACATCACCTTTTTGATTGGTCCTGAGGAGCAGTTTAGGTTTTTTACGGAAGCGCTTAGGGTTAATAAGCTTAAGAGTTATGTTAATCAGATGGTTTCTGAAGCTCAGGACTATTTCTCAAAGTGGGGATCAAGTGGTGAAGTTGATTTGAAGTATGAACTTGAGCATCTGATCATCTTGACAGCCAGTAGATGTCTGTTGGGACGTGAAGTTCGTGACAAGCTCTTTGACGATGTCTCTGCATTGTTCCATGACCTCGACAATGGAATGCTTCCAATCAGTGTTCTTTTCCCATACCTACCAATCCCAGCTCACAGACGCCGAGACAACGCACGCAAGAAGCTCGCTGAAATTTTTGCAAACATTATAACTTCACGAAAAGGTTCTGACAAATCAGAGGACGACATGCTGCAGTGCTTCATTGACTCAAAATACAAAGACGGCCGCCCTACAACAGAATCCGAAGTCACTGGTCTCCTCATTGCTGCTCTGTTTGCGGGGCAGCACACCAGTTCAATCACCTCAACTTGGACCGGAGCATATCTCCTGTGTAACAAACAGTACCTTTCTGGTGTGGTGGAGGAGCAGAAGAACTTGATGGCGAAACACGGCGATAGAGTTGATCACGATGTTTTGGCCGAGATGGACGTCTTGTATAGGTGCATTAAAGAAGCCTTGAGACTCCACCCTCCATTGATTATGCTGCTTCGAAGCTCACACAGCGATTTTAGCGTCACTACCAGAGAAGGGAAAGAGTATGACATTCCCAAGGGTCATATAGTTGCAACATCCCCTGCATTTGCAAACAGGTTACCTCATATTTTCAATGAACCCGATAAGTATGATCCTGATAGGTATGCTGTAGGGAGGGAAGAAGACAAGGCGGCAGGGGCATTCTCGTACATTTCCTTTGGAGGTGGTAGACATGGATGCCTCGGAGAGCCTTTTGCATATCTGCAGATTAAAGCAATTTGGACTCATCTTCTTAGAAACTTTGAACTGGAGCTTCTCTCACCTTTCCCTGAGATTGATTGGAATGCCATGGTTGTTGGAGTGAAAGGAAAAGTTATGGTCCGATACAAGCGAAGGGAGCTTTCTGTTGATCAATAG 1350 0.4563 MDVFDGNKSLNTILLLITTIIVAKLISSFIIPKSRKRLPPILPGWPIIGGLFRFLKGPIFMLREQYPKLGAVFTLRIFHKNITFLIGPEEQFRFFTEALRVNKLKSYVNQMVSEAQDYFSKWGSSGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVSALFHDLDNGMLPISVLFPYLPIPAHRRRDNARKKLAEIFANIITSRKGSDKSEDDMLQCFIDSKYKDGRPTTESEVTGLLIAALFAGQHTSSITSTWTGAYLLCNKQYLSGVVEEQKNLMAKHGDRVDHDVLAEMDVLYRCIKEALRLHPPLIMLLRSSHSDFSVTTREGKEYDIPKGHIVATSPAFANRLPHIFNEPDKYDPDRYAVGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFELELLSPFPEIDWNAMVVGVKGKVMVRYKRRELSVDQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00048 449 CDD CYP51-like 66 426 - -
Vifa4g00048 449 FunFam Cytochrome p450 51g1 89 447 - -
Vifa4g00048 449 PRINTS E-class P450 group IV signature 333 347 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS E-class P450 group IV signature 295 311 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS E-class P450 group IV signature 60 83 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS E-class P450 group IV signature 349 367 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS E-class P450 group IV signature 375 391 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS E-class P450 group IV signature 391 409 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 384 393 IPR017972 GO:0005506|GO:0016705
Vifa4g00048 449 PRINTS P450 superfamily signature 246 263 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS P450 superfamily signature 382 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS P450 superfamily signature 300 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 PANTHER CYTOCHROME P450 FAMILY 7 16 95 - -
Vifa4g00048 449 SUPERFAMILY Cytochrome P450 34 443 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 Gene3D Cytochrome P450 28 448 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00048 449 Pfam Cytochrome P450 93 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00048 Vifa-Chr4 6278854 6280636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00048 1 446 Miscellaneous Gene Families AT1G11680 73.156 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00048 K05917 - gmx:100810799 762.296