Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00026 ATGTTCTATTCATTCAGTTACACCTTCACATTTCTCTTCACTACACTTCTCTTCACATCCTCATCATCTTCACACATTGCTTCACAACCAGCCACCAAAATATTCATCACAAACCACAACATTCAAAGCTTCACCAATGCTGGTAAAGGCAACATCATCACTGGAATATCACAATTCAAAACATACCTCTCCCGTTTTGGTTACCTTATAAACAACAAACCATTCAGCGACCAATTTGATGCGAGTTTTGAATCTGCACTGATCAAATACCAACGGAATCTTGGACTCCAAGTAACTGGAAAACTCGATTCCAACACACTTTCTCAAATGATCACACCAAGATGCGGTGTTCCAGACACAACAAAAAGTCGTCGTAGTCATCGTAAAAATCATATTCATAACACGACACATTTTGTTTATTTTCCTGGAAAACCAAGATGGTCACGTGACAATGACATGCCAATCACACTAACCTATAGCTTTTCACGTGAATACATGATACATAGTTTAAGCTTACAAGAGATAAGAAAAACTTTCAAAAGAGCATTCTCTAAATGGAGTATTGTTATTCCAGTTATTTTCGTCGAATCCAAGGATTACAGTTTCGCAGACATAAAAATAGGGTTTTACAGCGGCGAACATGGCGACGGTGAGCCATTTGATGGTGTTCTTGGTGTGTTAGCGCATTCGTTCTCCCCGGAGATTGGAAGACTGCACCTCGATGCGGCCGAGACATGGGCGGTTGATTTTGGAGTAACGAAATCTGAAGTGGCTGTTGATTTGGAGTCAGTTGCAACACATGAGATTGGACATTTGTTGGGTTTGTCACATAGTAGTGTGAAAGAGGCAGTGATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGGTGATTTGAATATTGATGATATCAAAGGTGTGCAATCTCTTTATGGTTGTAATCCTAATTTTAGATCTCAGTGGTCATTGGAATCTGATAGTTCCACAAATCATGGTGCAAAGTTTGGAGTTGATACTTTTAGGTTGTCTATGATTGGTTTCACTATTGTAATTGCATTATTCATGTAG 1065 0.3906 MFYSFSYTFTFLFTTLLFTSSSSSHIASQPATKIFITNHNIQSFTNAGKGNIITGISQFKTYLSRFGYLINNKPFSDQFDASFESALIKYQRNLGLQVTGKLDSNTLSQMITPRCGVPDTTKSRRSHRKNHIHNTTHFVYFPGKPRWSRDNDMPITLTYSFSREYMIHSLSLQEIRKTFKRAFSKWSIVIPVIFVESKDYSFADIKIGFYSGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFGVTKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRGDLNIDDIKGVQSLYGCNPNFRSQWSLESDSSTNHGAKFGVDTFRLSMIGFTIVIALFM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00026 354 SMART col_5 143 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vifa4g00026 354 Gene3D Collagenase (Catalytic Domain) 46 316 IPR024079 GO:0008237
Vifa4g00026 354 FunFam Metalloendoproteinase 1 46 316 - -
Vifa4g00026 354 CDD ZnMc_MMP 146 311 IPR033739 GO:0008237|GO:0008270
Vifa4g00026 354 PANTHER MATRIX METALLOPROTEINASE 40 311 - -
Vifa4g00026 354 Pfam Matrixin 151 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vifa4g00026 354 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 139 314 - -
Vifa4g00026 354 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa4g00026 354 PRINTS Matrixin signature 110 123 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa4g00026 354 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa4g00026 354 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa4g00026 354 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vifa4g00026 354 Pfam Putative peptidoglycan binding domain 57 110 IPR002477 -
Vifa4g00026 354 SUPERFAMILY PGBD-like 55 120 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00026 Vifa-Chr4 3051674 3052738 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00026 - K07999 gmx:100781237 474.937