Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00024 ATGGGAAAAATTCCTCCTTCATTTCGTTCCGCACTCTCTTACCCAAACCTAATGAAACCATCTTCATCGCTTCCATCTTCTTCAAAACCCCATCATTTCCCCAACAAAACTCCCTCCAAATTCCCCGCTAAATCCCGAAAACCCCAGCAACAACAACAACCTCACCCTCCCAAACCCTTATCCCCATTCAAATCCCCAAGCCTCCCAGACGCTAAAACCCTTTTCAATTCCATCGTTAACACCTCAAATGCCCCCAACGATTTCCGCTTACACAACTCCCTTCTTCAATCCTACGCTTCAATTTCCACCATTAACGATTCCATCGCTTTTCTCCGTCACATGACGAAAGCTCATCCTTTATTCTCCCCTGAGAAATCCACTTACCATATCTTACTTACCCAATCCTGCAAATCTGCTGATCCCACTCTTGCCCCAATTCATCAAACCCTAAATTTGATGGTGTCTGATGGTGTAAGCCCTGATAAAGTTACTGTTGATTTAGCGGTTCGGTCGCTTTGTTCCGTTAATCGTGTAGATGACGCTGTTGAGGTTATTAAAGAGCTGTCTTTGAAGCATTGTGTGCCTGACATTTACACTTTCAATTTCCTTGTTAAGAATCTATGTAAGTGCCGCACGTTGAGCTCTGTCTATAGTTTTATTGAAGAAATGCGTAGTAAATTTGATGTGAAGCCGGATCTTGTTACTTATACCATTCTGATTGATAATGTGTGTAACACTAAGAATTTGCGTGAGGCGATGAGGTTGGTGAAGGTTCTCCATGAGGAAGGTTTTAAGCCGGACTGCTTTGTTTATAATACAATTATGAAAGGTTATTGTATGCTGAGTAAAGGGAGTGAGGCGATTGAGGTTTATAATCGGATGAAAGAGAATGGGGTGGAGCCTGATCTTGTTACTTATAACACGTTGATTTATGGGTTATCGAAATCCGGTCGGGTCACGGAAGCTAAGAAGTTGTTGCGTGTTATGGCGGAGAAGGGTCATTTTCCTGATGAGGTGACTTATACGTCGCTGATGAATGGGATGTGCAGGAAAGGTGAGACCTTGGCTGCATTGGCATTGTTGGAAGAGATGGAGATGAAGGGCTGCAGTCCAAATTCGTGCACGTATAACACGTTGCTACATGGGTTGTGCAAGTCTAGGCTGTTTGATAAGGCCATGGAATTGTATGATACGATGAAATCGGATGCTCTGAAGCTTGATATGGCTTCTTATGCTACGTTTGTCAGGGCTTTGTGCAGAGTTGGTAGAATTGCGGATGCTTATGAAGTATTTGATTATGCAGTCGAAAGCAAGAGTTTGACAGACGTTGCTGCTTACACAACATTGGAGAGCACACTTAAATGGTTCAAGAAAGCAAAAGAAGAAGGCCTTAAAGTTTAA 1401 0.429 MGKIPPSFRSALSYPNLMKPSSSLPSSSKPHHFPNKTPSKFPAKSRKPQQQQQPHPPKPLSPFKSPSLPDAKTLFNSIVNTSNAPNDFRLHNSLLQSYASISTINDSIAFLRHMTKAHPLFSPEKSTYHILLTQSCKSADPTLAPIHQTLNLMVSDGVSPDKVTVDLAVRSLCSVNRVDDAVEVIKELSLKHCVPDIYTFNFLVKNLCKCRTLSSVYSFIEEMRSKFDVKPDLVTYTILIDNVCNTKNLREAMRLVKVLHEEGFKPDCFVYNTIMKGYCMLSKGSEAIEVYNRMKENGVEPDLVTYNTLIYGLSKSGRVTEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNSCTYNTLLHGLCKSRLFDKAMELYDTMKSDALKLDMASYATFVRALCRVGRIADAYEVFDYAVESKSLTDVAAYTTLESTLKWFKKAKEEGLKV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vifa4g00024 466 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 192 449 - -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vifa4g00024 466 Gene3D Tetratricopeptide repeat domain 171 281 IPR011990 GO:0005515
Vifa4g00024 466 Gene3D Tetratricopeptide repeat domain 64 170 IPR011990 GO:0005515
Vifa4g00024 466 Pfam PPR repeat family 231 279 IPR002885 -
Vifa4g00024 466 MobiDBLite consensus disorder prediction 1 66 - -
Vifa4g00024 466 Pfam Pentacotripeptide-repeat region of PRORP 286 457 IPR033443 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 169 197 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 410 438 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 270 302 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 339 373 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Vifa4g00024 466 NCBIfam pentatricopeptide repeat 374 404 IPR002885 -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Vifa4g00024 466 SUPERFAMILY HCP-like 247 435 - -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vifa4g00024 466 MobiDBLite consensus disorder prediction 14 34 - -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vifa4g00024 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vifa4g00024 466 Gene3D Tetratricopeptide repeat domain 283 465 IPR011990 GO:0005515
Vifa4g00024 466 Pfam PPR repeat 198 226 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00024 85 461 Glycosyltransferase AT1G05670 27.586 9.99e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00024 - - pcin:129310283 662.914