LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g00022	ATGGCCAATTTTTCCTCCACAGCTTCCAATCAGATTCGCTTCCTGCTCAACTCCTTGAACCAAGTCAACTTTGACTCCGTTCTCCACCAACTTTCTCAGTTCACTGAATTTGGAACCGTTGGATGCATTTTGCTGCTCCAAACTTGCTTGGATCACTTGAATTATGTCAGAAGAGATAGAAAAGATATGCAACATGAGCCGATTCTCGGGGCAGTAGTTAAGTACCTCTTGGACAAACCAAACTTCAGCACGGTGTTTTCCGAGTCAATGAAGAATGTAGACATTAATGAAAGCTTTCTCGAAAGCTTTTGTAATGGATTGCAGCTGTCTTTATTGGAGAGAATTTCCGTCAGTCTTGCTTTATCTGATTCTGAAAATCCTGATGCCAGACTATGTGGCAAGAATTTTTGCATGACTCAGATTGAAGACTTGTATGCCAATCCTGGTTCTCTGAGTTTCCATGAGCAAATTCATACTGTTATCACGTTCCTCAAGCAGTCCGAAGGTCTCTCTGAGCATGTAGATTTCTTTATGCAGATATTATCGCTGGTGCAGTTCAATGACACACCACCTTTTGTATTGACCCCGATGCTACCTGACGAGATGCACGGGGCTGATTTTTTGAGGTGGAATATGGAGTTCATCCATGAGAGTGAAGAGAATGATTTTGATGCTATTTTGGCAGACATACAGAAGGAAATGAACATGGGGGATCTTGTAAAGGAACTAGGTTATGGATGCACAGTTGATGTCTCACATTGCAAGGAAGTATTGTCACTCTTCTTACCTTTAACGGATAATATGCTTGCTAAATTACTCGGTGCTATTGCACACTCTCATGCTGGGCTGGAGGATAACCAGAGCACATTCTTAACTTTCGGCGCAGCACTTGGATACAATAACTTGTCCGAGTTACCACCACTTAACTCTTGGAATGTTGACGTGTTGATAGATGCGGTCAAGGGTCTTGCACCACAAACCAATTGGGTCCGTGTCATTGAAAATCTTGATCATGAAGGATTTTACCTTCCCAGTGAAGAGGCATTCTCTTTTCTTATGTCTGTTTATAAGCATGCCTGTAAGGAACCATTTCCTCTCCGCGCCGTCTGCGGGTCTGTTTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAATATGCTGTAACCGCACCGCCAGAAATGTTTACATTTGCACACTCTGCGAGGCAACTGGCATATGCTGATGCAATTCATGGCCACAAGCTTCAAAATGGACATGCAAATCATGCGTGGCTGTGCATTGACCTTTTGGATGTCCTATGCCAGCTAGCTGAGAAAGGTCATGCCAGTGTTGTTTGGTCAATCATGGATTATCCCCTTAAACACTGTCCAGAAATATTGCTTCTTGGGATGTCCCATGTTAATACTACTTACAACCTCTTCCAGCGAGAAGTATCTCTGATTGTTTTTCCCATGATAGTAAAAAGTGATGTTGGTAGTGGAATGATTCTACACCTTTGGCACATAAATCCCAATCTGGTCCTGCGAGGCTTCATGGATTCTCAAAACGATGATGTGGGCAGCATTGTGAGAATTGTAGACATCTGCCAAGAGCTTAAGATTCTATTACAGGTGGTGGAAGTCATTCCCTATTATTACAGTATAAGGTTAGCCGCTGTTGCTTCAAGAAAAAACATTCTTGACCTTGAGAAGTGGTTGAGTAACAATTTAACTACATACAAGGATGCCTTCTTTGAGGAGTGCCTAAAGTTTTTGAAGGAAGTCCAAGCTGTCGGATCACATAATCTATCTGACCAATCTTTTCATCTGTCTGTTGGTGTTCTGAATTTCTTTGCTGATACAACTGCTATATTCTTGAAGGTTCTCAAGTCTCATACTGACTTGGTTACCTCTGGACTACTTTCTGAGGAGCTGGAGAGTTTGCATATATCTATTATAGATTCAAATCCAAGACTTCAAAATAGCGAGACTACTGATTCACCTACTTCTACACAATTTCCGAATGATGTTGAAGAAGAAGCAAACGCGATCTTCCAAGAGATGTTTCATGATAAGATATCCGTCCCTTCAGTGGTGCAAAATCTAATCCGATTCAGTGAATCTTCTGTGAAAAGAGACAATTTGATTTTTGAATGCATGATTGCAAACTTGTTTGAGGAGTATAAGTTTTACCCAAGGTATCCAGAAATGCAACTCAAAATTGCCGGACTTATCTTTGGTTCTGTGATTAAGCATCATCTTGTGACACATCTCTCTCTTGGGATAGCTCTTCGATATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCTAAAATGTTTATGTTTGGAAGTTTGGCACTGGAGCAATTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCACATTTTGCAAATTTCCCATTTGCGCAGCACACATTCCGAAATAGTTGCTTTCATCGAACAGGCTCTTGCTAGGATATCCTCTGGTCATACAGATGTAGATGGGACGACTCATGCTTCCGCTGTTATCAGTAACCATAGTTCTGCACAAGCTACATTAGGTCATGTAGAGCTCAGCGGCTCCAGCATCATACAACCTGGGCAGCAGCATTTGTCAATGCAGCTTCAACAGAGACGTGAGAATCCTCTGGATGATTCTCACAAGACCTCTGTTGGTTCGTCGACTGATATGAAGCCTCCGTTAGCTTCTCTAGGGCAATCTTCAGTGATTATACCGGCTGATACTTCTAGTGGCAATAAGTTACATAGCACAGTCAGTGCCTCATCAATGTTATCTTCTTCTTCTGGTTTTGTCCGTCCGTCTCGCGGAACCACTTCTACCAGGTTTGGATCTGCCTTGAATATTGAAACTTTGGTCGCTGCTGCAGAGAAAAGAGAAACTCCTATTGAGGCTCCGGGGTCAGAGGTTCAGGACAAGATATCATTCCTAATTAATAATATAGCTTCTACTAATACCGAGGCCAAAGCAAAAGAACTCACTGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCACAGTATATGGTCATGAAAAGAGCAAGCATCGAGCCAAATTTCCATGACATGTACCTGAAATTCTTAGACAAAGTTAATTCAAAGGCTTTGAACAGAGCGATTATCCTGGCAACATATGAAAATTGCAAGGTTCTTTTAGGATCCGAACTTATAAAGTCAAGTTCAGAAGAGCGCTCTTTGCTTAAAAATCTGGGGAGCTGGCTTGGAAAGTTGACAATTGGACGGAATCAAGTTTTGAGGGCTCGGGAAATAGATCCGAAATCTTTGATTATAGAGGCATATGAGAAGGGGCTGATGATTGCTGTTATTCCATTTACTTCAAAGGTCCTTGAACCATGCCAAAACAGTCTTGCATATCAGCCCCCTAATCCTTGGACCATGGATATGAAGGATGTCACACCAACTTCTCTCCTGAAGGATTGTAAAAGAGAAATTGAAGGAAACCCTGATTTCTCTAATAAAGATGTTGGAGCATCACCACAGATGATTTCTGATATAAAATCCAGCCTTGTTCCTCCAGTAAATCAAGTAGAGCTACCACTTGAAGTCCCCAATCCATCCAATAGCGGGGCTCATCCACATATGATGTCTCAGTATGCTGGCCCACTTCATATTTCCTCGGGAACCTTGATGGAAGATGAGAAAGTAGCACCTCTGAGCTTATCTGATCAATTACCTTCTGCTCAAGGACTGTTACAGGCAAATACTGCTCCAGCACCTTTCCAGCTCCCAACACAGATACATACTATTGGATCTCATGTTATTATAAATCCAAAGCTCAGTGGTTTTGGGTTACAGATTCATTTTCAAAGAGCGGTACCTATTGCAATGGACAGAGCCATCAAAGAAATAGTGTCCAGTATTGTGCAGCGTAGTGTTTCCATAGCAACCCAGACAACCAAGGAACTTGTTTTAAAGGATTATGCTATGGAATCAGAGGAGAAACGTATTAGAAATGCAGCAAACTTGATGGTTGCTAGTCTGGCTGGGAGTTTGGCTCACGTGACATGCAAAGAACCTTTACGGGCATCAATATCAAATCAACTGAAGACTTCACTTCAGAGTTTAAATATTGGAAATGAAATTTTGGAACAAGCTGTGCAACTTGTTACCAATGATAATCTAGATCTTGGTTGTGCAGTCATTGAAAATGCCGCCACTGATAAGGCAATAAAGACCATGGATACAGAGATTAGTCAACAACTTTCTTTGAGAAAGAAGCAGCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCACAAGGTTCTATGGGTGGTGTTCCAGAGCCCCTTCGCCCTAAACCTGGTCAGTTGTCCCTGTCACAACAACGTGTCTATGAGGACTTTGTTCGGCTTCCGTGGCAAAACCAGTCTAGCCAGAGTTCACATTCAATGTCCGCCAGTGTTTCTGTTCAATCTGCCAATAGTGGTATTACTGGCACCAGTGCTCCTGCATCAGGACAGATAAACCCTGGCTACGCTCTAACCACAGGATATGAGCGGCTCTCTCGACCAATAGATGATATGCCAGAACCTAATTTTACTCCACATCATAGTGCTTCCTCAATTAACATTAGAGCAGCCGACAATGTTTCCCATCATAGTATGGAGAAAGACTCCGTTGCCTCGTTTCCTTCAACTGCTTCCACCCCTGAGTTGCTTGCAGTGGATTCTTCAGATGCTGTGAAAGAATCTGGAGCTTCTTCACAGCCACTGGTTTCATCAGGTGCCGTGGAGCGCATTGGAAGTAGCTTCTTGGAATCATCTCTCTCTACAAGGGATGCTCTGGATAAATACCAAATTGTTGCACAAAAGTTGGAGGCTCTGGTCAACAATGATTCGAGGGAGGCAGAAATACAGGGAGTCATTTCTGAGGTACCTGAAATCATACTCAGATGTGTTAGTCGAGATGAGGCCGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTATATGACAATGCTTCAAACAGCGTTCATGTCTATGCGTATCTTGCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAAGAGCTTACTAGTTGGGTAATTTACTCGGATGAAGAGAGGAAATACAATAAAGATATTACTGTTGGTCTCATCCGTAGTGAACTACTTAATATAACCGAGTACAATGTTCACATGGCAAAACTTATTGACGGGGGAAGAAACAAGGCTGCTACGGAGTTTTCAATCTCTCTTCTTCAAACCCTGGTCATTGAGGAACCAAAAGTTGTTTCAGAACTTCACAATCTTATCGATGCTTTGGCAAAGCTTGCTACAAAGCCCGGATACCCTGAATCGTTGCAACAACTCATTGAGATGATCAAGAATCCTGTTACTTTATCTGCTAGTAATGCTGGAAATGAGGATAAATCGAGGCAATCAAGAGACAATAAGGGTCCTAGTCTGCTAGTTGCAAACAGGGAAGAGTTAAGCATTGTAGATTCTGCCAAACCTGATCCTGCTAGATTCCGTGAGGAGGTGTCCATGTTGTTTGCTAAATGGTATGGTATATGTGAACTTCCTGGTGCCAATGATACATCTGCTACCCACTTCATCCTACAGTTGCATCAGAACGGGCTGCTTAAGGGGGATGATATGACAGATCGCTTTTTCCGTCTGTTGATGGAAATCGCAGTTGCACATTGCTTATCCACCGAGGGGAATAATTCAGGAGCACTGCAATCTCCTCAACAAATGCTGTCAATGTCATTTCTCGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAGCAAACTTTTTCTTCTCTCCAAGATTCTAGCAGTTACTGTCAGATTTATTGTAAAAGATGCAGAGGAGAAGAAGGTCTCTTTTAATCCCAGACCATATTTCAGACTGTTCATCAACTGGCTTCTAGATCTCGGCTCACTTGAGCCTGTTACAGATGGTGCAAATCTCCAGATTTTGACTGGATTTGCCAATGCATTTCATGCTCTGCAGCCACTCAAAGTTCCTGGATTCAGTTTTGCTTGGCTGGAGTTGGTTAGTCACAGGAGCTTCATGCCAAAAATGCTGACTGGTAATCTTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATTTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCCGAGCTAGGAGATCCGGTCCGTGTTCTCTACAAGGGAACACTTAGGGTGCTCTTGGTGCTACTTCACGACTTCCCAGAGTTCCTTTGTGACTATCACTTTACCTTCTGTGATGTGATCCCTCCAAGTTGCATACAGATGCGAAATATTATTCTAAGTGCATTTCCGCGTAGTATGAGGCTTCCAGACCCTTCAACTCCAAATTTGAAGATTGATTTGCTTCAAGAAATAACTCAATCCCCTCGGATTCTTTCTGAGGTTGATGCAGCATTGAAAGCAAAGCAGATGAAGACTGACATAGATGAATACCTTCAGACAAGGGAACAGCCTTCTCCACTTTTATCTGAATTAAAAGAGAAGCTGCTACTCTCACCAAATGAAGCTGCCTCTGCCGGCACCCGGTACAATGTGCCATTAATCAACTCCCTTGTACTGCATGTTGGAATGCAGGCAATCGAGCAGCTCAAGGCTCGAGCTCCTCATGCACAGTCACCACAAACTACATATGGGCTGGCTGTATTTTCTGTTGGTGCTGCTTTGGATATTTTCCAGACTTTAATCGTTGACTTGGATACAGAAGGGCGCTACCTTTTCCTAAATGCTGTTGCTAACCAACTGCGTTATCCCAACACTCACACACACTACTTTTCCTTCGTCATCCTTTACTTGTTTGCAGAATCAAACCAGGAAATTATCCAAGAGCAAATTACGAGAGTCTTGCTAGAACGCCTTATAGTAAATCGACCTCATCCCTGGGGACTCCTCATTACTTTCATTGAGCTGATCAAGAATCTAAGGTATAATTTCTGGAACCGGTCATTCATAAGATGTGCACCAGAGATTGAAAAACTTTTTGAATCAGTCTCGAGATCTTGTGGAGGTCCGAAACCAGTAGAAGAGAGTATGGTTTCGGGTTGGGTCTGA	7101	0.4256	MANFSSTASNQIRFLLNSLNQVNFDSVLHQLSQFTEFGTVGCILLLQTCLDHLNYVRRDRKDMQHEPILGAVVKYLLDKPNFSTVFSESMKNVDINESFLESFCNGLQLSLLERISVSLALSDSENPDARLCGKNFCMTQIEDLYANPGSLSFHEQIHTVITFLKQSEGLSEHVDFFMQILSLVQFNDTPPFVLTPMLPDEMHGADFLRWNMEFIHESEENDFDAILADIQKEMNMGDLVKELGYGCTVDVSHCKEVLSLFLPLTDNMLAKLLGAIAHSHAGLEDNQSTFLTFGAALGYNNLSELPPLNSWNVDVLIDAVKGLAPQTNWVRVIENLDHEGFYLPSEEAFSFLMSVYKHACKEPFPLRAVCGSVWKNTEGQLSFLKYAVTAPPEMFTFAHSARQLAYADAIHGHKLQNGHANHAWLCIDLLDVLCQLAEKGHASVVWSIMDYPLKHCPEILLLGMSHVNTTYNLFQREVSLIVFPMIVKSDVGSGMILHLWHINPNLVLRGFMDSQNDDVGSIVRIVDICQELKILLQVVEVIPYYYSIRLAAVASRKNILDLEKWLSNNLTTYKDAFFEECLKFLKEVQAVGSHNLSDQSFHLSVGVLNFFADTTAIFLKVLKSHTDLVTSGLLSEELESLHISIIDSNPRLQNSETTDSPTSTQFPNDVEEEANAIFQEMFHDKISVPSVVQNLIRFSESSVKRDNLIFECMIANLFEEYKFYPRYPEMQLKIAGLIFGSVIKHHLVTHLSLGIALRYVLDALRKPADSKMFMFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHTDVDGTTHASAVISNHSSAQATLGHVELSGSSIIQPGQQHLSMQLQQRRENPLDDSHKTSVGSSTDMKPPLASLGQSSVIIPADTSSGNKLHSTVSASSMLSSSSGFVRPSRGTTSTRFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFLINNIASTNTEAKAKELTEILKEQYYPWFAQYMVMKRASIEPNFHDMYLKFLDKVNSKALNRAIILATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTMDMKDVTPTSLLKDCKREIEGNPDFSNKDVGASPQMISDIKSSLVPPVNQVELPLEVPNPSNSGAHPHMMSQYAGPLHISSGTLMEDEKVAPLSLSDQLPSAQGLLQANTAPAPFQLPTQIHTIGSHVIINPKLSGFGLQIHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESEEKRIRNAANLMVASLAGSLAHVTCKEPLRASISNQLKTSLQSLNIGNEILEQAVQLVTNDNLDLGCAVIENAATDKAIKTMDTEISQQLSLRKKQREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSASVSVQSANSGITGTSAPASGQINPGYALTTGYERLSRPIDDMPEPNFTPHHSASSINIRAADNVSHHSMEKDSVASFPSTASTPELLAVDSSDAVKESGASSQPLVSSGAVERIGSSFLESSLSTRDALDKYQIVAQKLEALVNNDSREAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNSVHVYAYLAILTAIRDVCKLAVKELTSWVIYSDEERKYNKDITVGLIRSELLNITEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVVSELHNLIDALAKLATKPGYPESLQQLIEMIKNPVTLSASNAGNEDKSRQSRDNKGPSLLVANREELSIVDSAKPDPARFREEVSMLFAKWYGICELPGANDTSATHFILQLHQNGLLKGDDMTDRFFRLLMEIAVAHCLSTEGNNSGALQSPQQMLSMSFLAIDIYAKLVFSILKGSSKLFLLSKILAVTVRFIVKDAEEKKVSFNPRPYFRLFINWLLDLGSLEPVTDGANLQILTGFANAFHALQPLKVPGFSFAWLELVSHRSFMPKMLTGNLQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKTDIDEYLQTREQPSPLLSELKEKLLLSPNEAASAGTRYNVPLINSLVLHVGMQAIEQLKARAPHAQSPQTTYGLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFVILYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNLRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVEESMVSGWV	2366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g00022	2366	MobiDBLite	consensus disorder prediction	882	896	-	-
	Vifa4g00022	2366	Gene3D	-	2121	2352	-	-
	Vifa4g00022	2366	FunFam	Transcription regulator	1827	2120	-	-
	Vifa4g00022	2366	Gene3D	-	653	823	IPR038535	-
	Vifa4g00022	2366	MobiDBLite	consensus disorder prediction	864	896	-	-
	Vifa4g00022	2366	Pfam	CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819	1275	1416	IPR024557	-
	Vifa4g00022	2366	Pfam	CCR4-Not complex component, Not1	1978	2347	IPR007196	-
	Vifa4g00022	2366	Gene3D	-	1826	2120	-	-
	Vifa4g00022	2366	Pfam	CCR4-NOT transcription complex subunit 1 HEAT repeat	481	622	IPR032194	-
	Vifa4g00022	2366	Pfam	CCR4-NOT transcription complex subunit 1 CAF1-binding domain	964	1136	IPR032191	-
	Vifa4g00022	2366	FunFam	Ccr4-Not transcription complex subunit	937	1141	-	-
	Vifa4g00022	2366	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX	1134	2355	IPR040398	GO:0017148\|GO:0030015
	Vifa4g00022	2366	Pfam	CCR4-NOT transcription complex subunit 1 TTP binding domain	651	820	IPR032193	-
	Vifa4g00022	2366	FunFam	Transcription regulator	656	824	-	-
	Vifa4g00022	2366	FunFam	CCR4-NOT transcription complex subunit 1	2117	2346	-	-
	Vifa4g00022	2366	Gene3D	-	936	1150	-	-
	Vifa4g00022	2366	Coils	Coil	1606	1626	-	-
	Vifa4g00022	2366	CDD	NOT1_connector	1599	1790	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g00022	Vifa-Chr4	2490645	2510370	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g00022	K12604		-	gmx:100783935	3889.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa4g00022	4	2490645	2510370	Vifa4g00022	4	2490645	2510370	ECH