Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04735 ATGCCCACAGATTCCCCTGTTGCGTCTGGCTCTAGATCAAACGGTGAATGCATTTACGCGGCGCTCATCGCCGCCGTCGAGACTTTCGTCTTCGTCTTTGCAGGTTGTTTCAACTCTGACCGTCCAGTTTTTCATTTTCACAAATCTTCCTATTCTGCTACCGATTTCACTCGCCTTGCTCAAGAAACTAGATTCACTGTTAATGAAGTGGAGGCATTGTATGAACTGTTTAAAAAGATAAGTAGCTCTGTAATTGATGATGGCTTGATTCACAAGGTGGAGTTTCAATTGGCACTATTTCAAACCCCAAATGGAGAAAATCTTTTTCTGGATCGAGTTTTTGATCTTTTTGATGAAAAGAGAAACGGTGTTGTCGATTTTGAAGAATTTGTCCATTCGCTCAGTGTTTTCCATCCTTACGCTCCTATGGATGAAAAAATAGATTTTGCGTTTAAGCTCTATGACCTGAGACAAACAGGGTTCATTGAGCCAGAGGAAGTCAAGCAAATGGTTATAGCCATTTTGATGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGTTGATCAAGACAATGATGGTAAAGTCGGTAAAGAAGATTGGAAAGCTTTTGTGAGTCGAAATCCGTCACTATTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGGGTTTCCTAGTTTTATATTCAAATCAGAGGCTGAAATTTGA 747 0.3963 MPTDSPVASGSRSNGECIYAALIAAVETFVFVFAGCFNSDRPVFHFHKSSYSATDFTRLAQETRFTVNEVEALYELFKKISSSVIDDGLIHKVEFQLALFQTPNGENLFLDRVFDLFDEKRNGVVDFEEFVHSLSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESEMNLSDDLLEAIVDKTIADVDQDNDGKVGKEDWKAFVSRNPSLLKNMTLPYLKDITTGFPSFIFKSEAEI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04735 248 SMART efh_1 146 174 IPR002048 GO:0005509
Vifa3g04735 248 SMART efh_1 190 218 IPR002048 GO:0005509
Vifa3g04735 248 SMART efh_1 109 137 IPR002048 GO:0005509
Vifa3g04735 248 CDD EFh 146 216 IPR002048 GO:0005509
Vifa3g04735 248 Pfam EF-hand domain pair 145 214 IPR002048 GO:0005509
Vifa3g04735 248 FunFam calcineurin B-like protein 3 55 248 - -
Vifa3g04735 248 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Vifa3g04735 248 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Vifa3g04735 248 SUPERFAMILY EF-hand 58 235 IPR011992 -
Vifa3g04735 248 Pfam EF-hand domain pair 113 131 IPR002048 GO:0005509
Vifa3g04735 248 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Vifa3g04735 248 Gene3D - 56 248 - -
Vifa3g04735 248 PRINTS Recoverin family signature 160 178 - -
Vifa3g04735 248 PRINTS Recoverin family signature 65 84 - -
Vifa3g04735 248 PRINTS Recoverin family signature 113 134 - -
Vifa3g04735 248 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Vifa3g04735 248 PANTHER CALCINEURIN B 35 247 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04735 Vifa-Chr3 1364531763 1364534503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04735 35 247 EF-hand Containing Proteins AT5G55990 61.972 1.65e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04735 K06268 - csav:115707156 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04735 3 1364531763 1364534503 Vifa3g04735 3 1364531763 1364534503 ECH