Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04729 ATGGAACGTGCTCGCAGACTTGCAAACCGTGCAACTCTGAAGCGTCTTCTCTCAGAGGCGAAACAGAATCGAAAGACCGAAACAACAACAACAACACCTGTTCCGTTTTCATTCTCTGGTTCATCTTCAAGGTACGTTTCCTCTGTTTCAAACTCTGTTCTCAGAGGCAGAGGATCCAAACCAGACAACAATGTTTCACGACGTGTTGGTGGATTTCTCGGTGTTGGTTATCCATCACAATCTCGATCCATCTCTGTTGAAGCGTTGAAACCGAGCGACACATTTCCCAGACGCCATAACTCAGCAACACCGGATGAACAAACGAAAATGGCTGAATCTGTTGGTTTCGATAACCTTGATTCACTAGTGGATGCAACAGTGCCGAAATCGATTCGCTTGAAGGAAATGAAGTTCAATAAATTTGATGGTGGATTAACAGAAGGTCAAATGATTGAACACATGAAGGATTTAGCTTCGAAGAACAAGGTTTTCAAATCTTTTATTGGTATGGGATACTATAACACTCATGTTCCGCCTGTGATTTTGAGGAACATCATGGAGAATCCTGCTTGGTATACACAGTATACGCCTTATCAAGCTGAGATATCGCAAGGCCGTCTTGAGTCTTTGTTGAATTTTCAAACCATCATTACTGATCTCACTGGTTTGCCTATGTCGAATGCTTCATTGCTTGATGAAGGTACTGCTGCTGCGGAAGCAATGTCTATGTGTAATAATATTCAAAAGGATGGATTTGAGCTCAAGGTTGTGGTGAAAGATCTTAAGGATATTGATTACAAATCTGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCTGGTACTGAAGGTGAGGTTTTGGATTATGGTGAGTTTATTAAGAAGGCTCATGCTAATGAGGTTAAGGTTGTTATGGCGAGTGATCTGTTGGCATTGACTGTGTTGAAGCCTCCGGGTGAGTTTGGAGCTGATATTGTTGTTGGTTCGGCTCAGAGATTTGGTGTTCCGATGGGTTATGGTGGTCCCCATGCTGCTTTCTTGGCTACTTCGCAAGAGTATAAGAGGATGATGCCTGGAAGAATCATCGGTGTTAGTGTTGATTCGTCTGGAAAGCAAGCTTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATCCGTAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAGCCATTGCACAAAGGGTTCATGGTCTTGCTGGGGTGTTTGCTCTTGGATTAAAGAAACTCGGGTTTGAAGTTCAGGATCTTGGCTTCTTCGACACTGTGAAGGTTAAGACTTCAAATGCCAAAGCAATTTCAGATGCTGCTATCAAAAGTGAAATCAATTTGCGCGTTGTAGATGGAAACACTATCACCGCTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGGGGCAAGCCTGTCTCATTCACAGCGGCATCTCTTGCACCTGAATTTCAAAATGCAATTCCTTCTGGATTAGTTAGGGAGAGTCCCTATTTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTGAGGTACATTCAAAGGCTACAATCAAAAGATCTTTCACTTTGCCACAGTATGATCCCACTTGGATCTTGTACAATGAAGTTGAATGCAACAACTGAAATGATGCCGGTGACATGGCCTAGCTTTACCGATTTGCACCCTTTCGCACCAACTGAACAGGCTCAAGGATATCAGGAAATGTTCGCCAACTTAGGTGACCTGTTGTGTACCATCACTGGATTTGACTCCTTCTCTTTGCAACCAAATGCCGGTGCTGCTGGAGAATATGCCGGACTCATGGTTATTCGTGCATATCATTTGTCAAGAGGGGACCACCACCGCAACGTTTGCATTATACCAGCATCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGGTTGGAATGAAAATTGTTACCATAGGAACTGATGCTAAGGGAAACATTAACATTGAAGAGTTGAAGAAAGCTGCTGAAAAACATAAGGACAACTTATCTGCATTTATGGTAACATATCCTTCAACTCACGGTGTTTATGAAGAAGGTATCGATGATATTTGCAAGATTATCCATGATAATGGTGGCCAAGTGTACATGGATGGTGCCAACATGAATGCACAGGTAGGACTTACAAGCCCAGGTTGGATTGGAGCCGATGTTTGCCATCTCAATCTCCACAAGACATTTTGCATTCCTCACGGAGGAGGAGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCCTCACACCCCGTGGTGCCAACCGGTGGAATTCCTGCACCTGAGAATCCTCAACCACTTGGTAGTATCGCAGCTGCACCTTGGGGATCAGCGCTCATATTGCCAATCTCTTACACATACATAGCCATGATGGGATCTCAAGGACTCACTGATGCGTCAAAGATAGCCATTTTGAATGCAAACTATATGGCGAAGCGATTGGAGAGTTATTACCCAGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAGTTCATTATTGACTTGAGAGGATTTAAGAATACTGCTGGAATAGAGCCTGAAGATGTTGCGAAACGTCTCATGGACTATGGATTTCATGGACCAACAATGTCATGGCCTGTGGCTGGTACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTATTGTGATGCTCTTATTTCCATTAGAAAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGATGTTCACAACAATGTTCTCAAGGGAGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACCAAACCATACTCCAGGGAGTATGCTGCCTTCCCTGCTGCATGGCTCCGTGGTGCAAAGTTTTGGCCTACCACAGGACGTGTTGATAATGTGTACGGTGACCGCAACCTGGTTTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCAACTGCATAA 3093 0.4436 MERARRLANRATLKRLLSEAKQNRKTETTTTTPVPFSFSGSSSRYVSSVSNSVLRGRGSKPDNNVSRRVGGFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESVGFDNLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTIITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKDGFELKVVVKDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLGFEVQDLGFFDTVKVKTSNAKAISDAAIKSEINLRVVDGNTITAAFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEFQNAIPSGLVRESPYLTHPIFNTYQTEHELLRYIQRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTDLHPFAPTEQAQGYQEMFANLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPASAHGTNPASAAMVGMKIVTIGTDAKGNINIEELKKAAEKHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENPQPLGSIAAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTESESKAELDRYCDALISIRKEIAEIEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLPASQAVEEQAAATA 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04729 1030 Pfam Glycine cleavage system P-protein 516 792 IPR020581 GO:0004375|GO:0006546
Vifa3g04729 1030 Pfam Glycine cleavage system P-protein 250 499 IPR020581 GO:0004375|GO:0006546
Vifa3g04729 1030 Gene3D Aspartate Aminotransferase, domain 1 829 968 IPR015422 GO:0003824
Vifa3g04729 1030 FunFam Glycine dehydrogenase [decarboxylating], mitochondrial 178 249 - -
Vifa3g04729 1030 SUPERFAMILY PLP-dependent transferases 98 499 IPR015424 -
Vifa3g04729 1030 CDD GDC-P 147 499 IPR020581 GO:0004375|GO:0006546
Vifa3g04729 1030 Coils Coil 689 709 - -
Vifa3g04729 1030 CDD GDC-P 542 937 IPR020581 GO:0004375|GO:0006546
Vifa3g04729 1030 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 830 968 - -
Vifa3g04729 1030 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 581 820 - -
Vifa3g04729 1030 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 89 1021 IPR003437 GO:0004375|GO:0006544
Vifa3g04729 1030 MobiDBLite consensus disorder prediction 23 44 - -
Vifa3g04729 1030 FunFam Glycine cleavage system P protein 407 495 - -
Vifa3g04729 1030 Gene3D - 257 418 IPR015421 GO:0003824
Vifa3g04729 1030 SUPERFAMILY PLP-dependent transferases 517 1015 IPR015424 -
Vifa3g04729 1030 NCBIfam aminomethyl-transferring glycine dehydrogenase 251 1014 IPR003437 GO:0004375|GO:0006544
Vifa3g04729 1030 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 80 1020 IPR020581 GO:0004375|GO:0006546
Vifa3g04729 1030 MobiDBLite consensus disorder prediction 17 44 - -
Vifa3g04729 1030 Gene3D - 581 804 IPR015421 GO:0003824
Vifa3g04729 1030 Gene3D - 179 256 IPR015421 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04729 K00281 - gmx:100819714 1819.67