Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04716 ATGGAGAACATTACAAAGGATGATGCATCCTCAAACAGCATCAATTCAGAACAGCCATACAGAACTTGGTACCACTTTCAGCCCCCAAAAAATTGGATGAATGATCCTAATGGACCATTGTACTACAAAGGAGTTTACCATTTCTTCTACCAATATAACCCTGATGGAGCAACCTTTGGTAAAACAATGATATGGGCTCATTCTGTATCCAAAGATCTCATAAATTGGACTCATCTCAATGATGCCATTACACCATCTTGTACTGGTGACATCAACAGTTGCTTCTCAGGCTCAGCCACTATACTCCCAGGTGATATACCTGCTATGTTGTACACAGGAATCAATGAAAAAAGACATCAAGTTCAAAACTTAGCTATGCCAAAAGATCCATCTGACCCTTACTTAAAGGAATGGGAAAAACACCATCAAAATCCATTGATGACAGCACCTAGTGGAGTCGAAGAGTGTGAATTCAGAGACCCTTCAACTGCATGGAAAGGAAAAGATGGAAAATGGAGGGTGATAATTGGTGCTCAAAATGGTGATGAAGGAAAAGTTATTCTTTGCAAAAGTGATGATTTTGTTACTTGGATAGTTGATCCTAGTCCTTTTCTTGCAACACAAGGTACTGGTGTTATTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAGCAAAAATGGGGTTGATACAACTATGGAAAATTCAAGTGTTAGACATGTCTTGAAGATAAGTTATCAACGAACGCATATCGATTACTACTTAATTGGGAAATATGTATCTAATTCTGGTCAGGAAAAGTTCATTCCTGATGAAAAATATAGTGGAACTTGGAAGGACTTGAGACTTGACTATGGTAATTTTTTTGCTTCAAAGTCATTTTTTGATTATGCTAAGAACAGGAGAATAATATGGGCATGGGTGGAAGAAACTGACTCTAGACAAGATGACATTGAAAAAGGATGGGCTGGTCTACAGGCAATTCCAAGGAAGTTTTGGCTTGATAAAAATGGGAAGCAATTAATGCAATGGCCGATTGAAGAGTTAGAAAAACTACGCTACAATCAAATCAGTATCACGGGTGAGACGCTCCTAAGCAGATCAATTCTTGAAGTAAAAGGTATCACAGCATCTCAGGTTGATGTGGAAGTCTTGTTTGAGCTACCTGGTCTACAAAATGCTGAGTTACTAGATCCAAGTGACGTTGATCCTCAAATACTCTCTAGTGAAGATTATGCATCAAGAAAGGGTGTGATAGGGCCATTTGGTTTGCAAGTTTTAGCATCAAAAGACCAGACAGAAAAGACTACAATATCTTTCAAAATATATAGAGTCCTCGATCGATATATATGCTTGATGTGTAGTGATATGAGCAGGTCTACATTGAGAGAGGACCTTGGCAAAACAATATATGCAACTATATTTGACATTGATCCAAATCTTAAAACAATTTCACTTAGAAGCTTGATTGATAGATCCATTATTGAGAGTTTTGGAGATGGAGGGAGAGCTTGCATAACAAGTAGAGTTTATCCCTTGTTAGCTATAGAGAAAGATGCACATCTTTATGTATTCAATGATGGAATCCAAAGTGTGATTATCTCACAACTTAATGCTTGGAGTATGAAGAAGGCAGAGTTTGGAGTGGAAAGCCTAATATAG 1662 0.3761 MENITKDDASSNSINSEQPYRTWYHFQPPKNWMNDPNGPLYYKGVYHFFYQYNPDGATFGKTMIWAHSVSKDLINWTHLNDAITPSCTGDINSCFSGSATILPGDIPAMLYTGINEKRHQVQNLAMPKDPSDPYLKEWEKHHQNPLMTAPSGVEECEFRDPSTAWKGKDGKWRVIIGAQNGDEGKVILCKSDDFVTWIVDPSPFLATQGTGVIECPDFFPVYINSKNGVDTTMENSSVRHVLKISYQRTHIDYYLIGKYVSNSGQEKFIPDEKYSGTWKDLRLDYGNFFASKSFFDYAKNRRIIWAWVEETDSRQDDIEKGWAGLQAIPRKFWLDKNGKQLMQWPIEELEKLRYNQISITGETLLSRSILEVKGITASQVDVEVLFELPGLQNAELLDPSDVDPQILSSEDYASRKGVIGPFGLQVLASKDQTEKTTISFKIYRVLDRYICLMCSDMSRSTLREDLGKTIYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSRVYPLLAIEKDAHLYVFNDGIQSVIISQLNAWSMKKAEFGVESLI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04716 553 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 544 IPR013320 -
Vifa3g04716 553 Gene3D - 358 542 - -
Vifa3g04716 553 ProSitePatterns Glycosyl hydrolases family 32 active site. 25 38 IPR018053 GO:0004553|GO:0005975
Vifa3g04716 553 SMART glyco_32 25 502 IPR001362 GO:0004553|GO:0005975
Vifa3g04716 553 Pfam Glycosyl hydrolases family 32 N-terminal domain 25 345 IPR013148 -
Vifa3g04716 553 CDD GH32_Fruct1-like 31 334 - -
Vifa3g04716 553 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 14 546 - -
Vifa3g04716 553 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 357 542 - -
Vifa3g04716 553 Gene3D Glycosyl hydrolase domain; family 43 29 357 IPR023296 -
Vifa3g04716 553 Pfam Glycosyl hydrolases family 32 C terminal 348 541 IPR013189 -
Vifa3g04716 553 SUPERFAMILY Arabinanase/levansucrase/invertase 16 346 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04716 Vifa-Chr3 1356788321 1356790776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04716 40 547 Glycoside Hydrolase AT3G13790 52.031 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04716 - K01193 gmx:100806220 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04716 3 1356788321 1356790776 Vifa3g04716 3 1356788321 1356790776 ECH