Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04673 ATGGCTTCAGCTTCTGTTTCAATGTCTTTACCACTACCTCAAGCCACACACAAAAACCTCACCACACCCTTCTTGAAAGCCTTACCCTTTCCACAAGCAAAGAAGACACTAGTCAACAATTCAACTTCAAAATCCAATCTTGTTGGAGTTCAAGCGTCATTGAAAGACCAAACAGTCAAGGGTCTAACAGCTTTTGCTTTGACAGCTTCTATGGTCATTCCAGATGTTGCTCATGCAGCTGGAAATGACTTTTCACCTTCTCTTAAAAACTTTTTACTTAGTATTGCTGCTGGTGGAATTGTTCTTACAGCTATATTAGGTGCTGTTATTGGTGTTTCCAACTTTGATCCTGTTAAGAGAACTTAA 366 0.3962 MASASVSMSLPLPQATHKNLTTPFLKALPFPQAKKTLVNNSTSKSNLVGVQASLKDQTVKGLTAFALTASMVIPDVAHAAGNDFSPSLKNFLLSIAAGGIVLTAILGAVIGVSNFDPVKRT 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04673 121 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vifa3g04673 121 Gene3D Single helix bin 84 121 - -
Vifa3g04673 121 FunFam Photosystem II psbX protein 83 121 - -
Vifa3g04673 121 PANTHER OS07G0673550 PROTEIN 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04673 Vifa-Chr3 1340557138 1340557503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04673 - - tpra:123916525 211.075