Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04670 ATGGATTTGAGATTGGTAGGTTTGGATGGTCCAGTATTGCATGCTCTTCACCAAATGATGGATCTTTCAGACTATAATTCTTCCGACAAGTCATCATCACACAATGCTCCGACACGGTCGTATGTTAGAGATGCGAAGGCGATGGCTGCAACTCCGGCGGACGTGAAGGAATATCCGAATTCATACGTGTTCGTGATCGACATGCCAGGGTTGAAATCTGGTGACATAAAGGTTCAGGTTGAAGATGATAACGTGCTTGTGATAAGTGGTGAAAGGAAAAGGGAAGAAGAGAAAGAAGTGTGTCAAGATGGGGTGTTGTGTGTTACCGTTGAGAAATTGCCTCCTCCTCAACCTAAGAAACCCAGAACTATTGAGGTTAAGATTGCTTGA 390 0.4436 MDLRLVGLDGPVLHALHQMMDLSDYNSSDKSSSHNAPTRSYVRDAKAMAATPADVKEYPNSYVFVIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEVCQDGVLCVTVEKLPPPQPKKPRTIEVKIA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04670 129 Pfam Hsp20/alpha crystallin family 54 99 IPR002068 -
Vifa3g04670 129 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 44 129 IPR002068 -
Vifa3g04670 129 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 14 99 IPR031107 -
Vifa3g04670 129 Gene3D - 12 102 IPR008978 -
Vifa3g04670 129 SUPERFAMILY HSP20-like chaperones 33 121 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04670 Vifa-Chr3 1339948258 1339948740 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04670 K13993 - egt:105977211 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04670 3 1339948258 1339948740 Vifa3g04670 3 1339948258 1339948740 ECH