Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04615 ATGATGCAGAGATTCAAAGCTCTGCTACCACGAACTAGATTCTCTTCTCCCTCGCTCTTTTCTAATAGTCGAGCTTTCTCCGCTCAACCAGGTTACGCTGAACGCAATGACGACGACGAAGATTCCCAAAACCAGATTTTGGTTGAAGGAAGAGCGAAATCGCGTACAGCTATTCTCAACAGGCCATCTTCTCTGAATGCGCTCACTACTTCAATGGTTGCTAGGTTGAAGAGGCTTTATGATTCGTGGGAAGAAAACTCTGATATTGGCTTTGTTCTAATGAAGGGTAGAGGCAGCGCTTTCTGTTCGGGTTCGGATGTTGTTAACCTGTATCACTCGCTCAATGAAGGAAAGGCTGAAGAAGCTAAAGAGTTTTTTAGAACGTTATATTCATTTGTATATCTCCAAGGGACATATCTTAAACCACACGTTTCTATTTTGAATGGAAGGACAATGGGCTGTGGATCTGGAATTTCTCTTCCAGGGATGTTCCGTGTAGTGACTGATAAAACTATTTTTTCCCACCCAGAGGCTCAAATAGGCTTCCACCCTGATGCTGGAGCTTCTTACCTTTTGTCTCGTCTACCCGGCTACTTAGGGGAATACTTGGCCCTTACAGGAGATAAGCTTAATGGTGTAGAAATGATTGCCTGCCGCCTAGCTACACATTATTCACTGAATGCTAGGCTTGCTTGGCTTGAAGAACGCCTTGGTAAACTAGTCACAGACGATCCATCTATTGTAGAGGCATCCCTTTCACAATATGCTGATCTCGTTTATCCCGAGAGAAACGGCATCCTTCACAAGATTGATACTATAGATAGATGTTTCAGTCATGATACAGTGGAGGAAATCGTTGAAGCTTTGGAGAAAGAGGCAGCTGATTCTTTAGATCAATGGTGTTTGACAACTCTCAGGAAACTAAAAGAAGCCTCCCCATTGAGTTTGAAAGTTATTTTACAATCTATTCGGGAAGGTAGATTTGAAACTCTTGATCAATGTCTTGTACGTGAGTATCGTGTATCTGTTCGAGCAATTTCCAAGCAGGTTTCCTCTGATTTCACTGAGGGTGTTCGAGCACGAATGGTTGATAAGGATTTTGCACCAAAGTGGGATCCACCTAGTTTAAAAGATGTATCAGAGGACATGGTTGACCATTATTTCTCTCCGTTTGGCGAATTTGAGCCTGAACTGGTCCTGCCTACAGCATTGAGAGAACCTTACATGTGA 1230 0.4309 MMQRFKALLPRTRFSSPSLFSNSRAFSAQPGYAERNDDDEDSQNQILVEGRAKSRTAILNRPSSLNALTTSMVARLKRLYDSWEENSDIGFVLMKGRGSAFCSGSDVVNLYHSLNEGKAEEAKEFFRTLYSFVYLQGTYLKPHVSILNGRTMGCGSGISLPGMFRVVTDKTIFSHPEAQIGFHPDAGASYLLSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNARLAWLEERLGKLVTDDPSIVEASLSQYADLVYPERNGILHKIDTIDRCFSHDTVEEIVEALEKEAADSLDQWCLTTLRKLKEASPLSLKVILQSIREGRFETLDQCLVREYRVSVRAISKQVSSDFTEGVRARMVDKDFAPKWDPPSLKDVSEDMVDHYFSPFGEFEPELVLPTALREPYM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04615 409 Gene3D - 40 402 - -
Vifa3g04615 409 SUPERFAMILY ClpP/crotonase 46 374 IPR029045 -
Vifa3g04615 409 CDD crotonase-like 46 223 - -
Vifa3g04615 409 Pfam Enoyl-CoA hydratase/isomerase 55 388 IPR045004 -
Vifa3g04615 409 Coils Coil 279 299 - -
Vifa3g04615 409 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 40 403 IPR032259 GO:0003860
Vifa3g04615 409 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 40 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04615 Vifa-Chr3 1321869336 1321876559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04615 2 409 Acyl Lipid Metabolism Gene Families AT4G31810 67.229 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04615 K05605 - gmx:100808892 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04615 3 1321869336 1321876559 Vifa3g04615 3 1321869336 1321876559 ECH