Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04614 ATGAAGTTCATGAAGCTAGGTTCTAAGCCTGATGCACTTCAATATGATGGCAACTTTGTCAGGCATATATCTTCTGAATTAGCTACAGATATTATCATAGCTGTTGGTGAAGTTAAGTTTGACCTTCACAAGTTCCCTCTACTGTCCAAGAGCAATCGCTTACAGAAGTTGGTGTCGAAGGCTAACGAAGATAATGCTGATGAAATATACTTGAACGATTTCCCGGGAGGGCCCAAGGCGTTTGAAATATGTGCGAAGTTTTGTTATGGAATGACTGTTACTCTAAATGCTTACAATGTCGTGGCTGCTCGATGTGCGGCTGAGTGTCTTGAGATGACAGAGGAGATGGATAGAGGAAACTTGATTTTCAAAATTGACGTGTTTCTTACCTCGAGTATCTTTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTGCTAAATCACTTTTCCCTTGGTCCGAGGATCTAAAGATTGTCGGAAGATGCATAGATTCCATAGCTTCGAAAACTTCTGTTGATCCGGTGAACATCACTTGGTCTTACACTTACAACCGGAAACTAGCACATGTTGATAAAATTGTCGAGGACAAGGTAACAGCAAAGGAGAAATTTGAGTCTGTTCCAAAGGATTGGTGGGTTGAGGATATATGTGAGCTGGACATTGATCTTTATAAACGCGTAATGATTACTGTGAAATCAAAGGGGAGAATGGATGGTGTTGTGATCGGCGAGGCACTGAAAACGTATGCAGTTAGATGGTTACCTGATTCCGTTGATGCATTGGTTTCCGATGCTCATGCCCGAAGGAACAAATCGCTGGTTGAAACAATTGTGTGTTTATTACCGTGTGACAACGGTGTTGGTTGCTCTTGTAGTTTCTTGTTGAAACTATTGAAAGTGGCCTTACTTGTTGAAGCCGATGAATCGTCCAGACAAGAGTTGATGAACAGCATCAGCCTAAAATTGCACGAAGCTTCCATCAAAGATATACTGATTCCAGCTAGGTCTCCGCAGATTACTACTTATGATATTGATTTGGTGCAAGATCTTTTGAACAGGTACATGACTAATGAAAAGAAAAGCCGTGGCGTGGAGGCTGTGGACAAGAATGATAAAGTATTCGGTGAATCTATTTTAGGGAATAGGTCGATACTGAATGTTGGCAAGTTGGTTGATGGTTATCTTGGAGAAATTGCACATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGATCTTTCACAGTCTATTCCTGAGTTTGCTAGACCAAATCATGATGGTCTATACAAAGCCATCGACATCTACTTGAAGGAGCACCAAAGTTTGACAAAATCTGAAAGGAAGAACATATGTGGACTAATGAATGTCAAGAAATTAACAGCCGAAGCATCGGCGCATGCTGCACAGAACGAACGTCTTCCCGTTCGAGTTGTTGTGCAGGTTTTATATTTCGAACAAGTTAGAGCTGCAGCAAGCACCCGGGCATTTGCCAGTCCACGCTCACTTCTAAACGGAGATGCAGACTACGAGAAAACTTTGGGAGGGAGCTGCCATTCCCTGATCAGACAAACAAGCCGCATGAAGATCAAAGACGACGAGTTTCGCAGGAGTGTGAGGTTGAGTAACAAGAGTAGCAAAAACAGCAAAAGTGGCATGCAGTTGCTTCCGTCTCGGTCGAGGAGAATATTTGATAAGATATGGAATGTTGGTAAAGGACAAGGAGAGAATAGGAGTTCAGAAACTTCAGGGGGTTCTAATAGTCCAACTTCTGTAGTACTTGGAGATACAAAGTCTTCATCTTTGAGACACCAAAGACATTCTATCTCTTAA 1830 0.4202 MKFMKLGSKPDALQYDGNFVRHISSELATDIIIAVGEVKFDLHKFPLLSKSNRLQKLVSKANEDNADEIYLNDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAECLEMTEEMDRGNLIFKIDVFLTSSIFRSWKDSIIVLQTAKSLFPWSEDLKIVGRCIDSIASKTSVDPVNITWSYTYNRKLAHVDKIVEDKVTAKEKFESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKTYAVRWLPDSVDALVSDAHARRNKSLVETIVCLLPCDNGVGCSCSFLLKLLKVALLVEADESSRQELMNSISLKLHEASIKDILIPARSPQITTYDIDLVQDLLNRYMTNEKKSRGVEAVDKNDKVFGESILGNRSILNVGKLVDGYLGEIAHDPNLSLSSFVDLSQSIPEFARPNHDGLYKAIDIYLKEHQSLTKSERKNICGLMNVKKLTAEASAHAAQNERLPVRVVVQVLYFEQVRAAASTRAFASPRSLLNGDADYEKTLGGSCHSLIRQTSRMKIKDDEFRRSVRLSNKSSKNSKSGMQLLPSRSRRIFDKIWNVGKGQGENRSSETSGGSNSPTSVVLGDTKSSSLRHQRHSIS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04614 609 MobiDBLite consensus disorder prediction 572 598 - -
Vifa3g04614 609 MobiDBLite consensus disorder prediction 571 609 - -
Vifa3g04614 609 SUPERFAMILY POZ domain 21 115 IPR011333 -
Vifa3g04614 609 Pfam NPH3 family 211 464 IPR027356 -
Vifa3g04614 609 PANTHER OS12G0117600 PROTEIN 25 566 IPR043454 -
Vifa3g04614 609 Pfam BTB/POZ domain 26 114 IPR000210 GO:0005515
Vifa3g04614 609 Gene3D Potassium Channel Kv1.1; Chain A 13 118 IPR011333 -
Vifa3g04614 609 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vifa3g04614 609 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04614 Vifa-Chr3 1321745295 1321748426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04614 27 515 EF-hand Containing Proteins AT3G44820 31.589 6.50e-86 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04614 - - gmx:100809437 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04614 3 1321745295 1321748426 Vifa3g04614 3 1321745295 1321748426 ECH