Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04594 ATGGCTAAACATTCAATGGTTTTGCCACAAGGTGTTGTTTTTGGGAATGAGAGTATTGGCCAGAGATTGATTAAGAGAAGGAGATTGGTTTCCGGGATTGGGTTGTGTTTGAATGATAAATCTAAGTTTAGTTTTTCGGTTAAAGATCTGAGAGGGAAGTCTTGTTTTCCTGAGGGATTGAGGGGTTTGAACAATTTGGGTAGTACATGTTTTATGAACTGTATGTTGCAAGCATTGCTTCATGCACCTATTTTCAAGGACTATTTCTTGAGTGATGGACATGATTCGGAAGATTGTAAAAGAAGAACGATGGATCGGTTGTGTTTGATTTGTGATATTAATGCTGTTTTTTTAGCTATGTATTCGGGCGGTCGAACTCCGTATAGCCCTGCTCGGTTTCTATACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAATTACGAGCAACAGGACGCCCACGAGTTTTTCATTGCGATGTTAGATGCAATCCATGAGAAAGAGGACATAACGGGGAAAGGAAGCAAAGGAAATGGTGGAGAGTGTCAATGCATTGCTCATAAAGTGTTCTATGGGCTATTGAGATCAGATGTTACTTGTATGGCTTGTGGATTCACCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACCTCGACATTAATATCTCTTTGGTCGAAAAGGGTAAAAAACTTACCAAACAGAATGAGGATGACAACATGTCTACACTTCTAGGTTGTTTGGATTTGTTCACTAGGCCAGAGAAGTTGGGGCCGGACCAGAAACTTTACTGCCAAAATTGTCAGGAAAGGCAAAACTCCTTGAAACAAATGTCTATTAGAAAGCTCCCTCTAGTACTTACTTTGCATGTAAAACGGTTTGAGCATTCTTTCGTTAAGAAGTTGTCAAGGAAGATTGATCGCTACCTACAATTTCCGTTCTCCTTGGACATGACTCCTTATTTGTCCTCTTCTATTCTTAGAGCTAGATATGGAAATAGAATTTTTAATTTTGGAGGTGATGAATCAGAAACTTTTTCCAAGTTCGAGATTTTCGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATATTTCTTTTGTAAGATTAAGGAAGCAATGGTATAGATGTGACGATGCTTGGATAACCGAGGTTGATGAGGCAATAGTCAGAGCTTCACAGTGTTACATGATCTTCTATGTGCAAAAGACTTTGTTCAATAATGCAAATGAAGATCTTAGTCACCTTCCAAATTCACCTGGAAGAGAGGTGTTTATTCCTATTGCTGGTTGCTGCTAG 1305 0.3992 MAKHSMVLPQGVVFGNESIGQRLIKRRRLVSGIGLCLNDKSKFSFSVKDLRGKSCFPEGLRGLNNLGSTCFMNCMLQALLHAPIFKDYFLSDGHDSEDCKRRTMDRLCLICDINAVFLAMYSGGRTPYSPARFLYSWWQHSANLANYEQQDAHEFFIAMLDAIHEKEDITGKGSKGNGGECQCIAHKVFYGLLRSDVTCMACGFTSTTYDPFLDISLNLDINISLVEKGKKLTKQNEDDNMSTLLGCLDLFTRPEKLGPDQKLYCQNCQERQNSLKQMSIRKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGGDESETFSKFEIFAVVTHSGTLESGHYISFVRLRKQWYRCDDAWITEVDEAIVRASQCYMIFYVQKTLFNNANEDLSHLPNSPGREVFIPIAGCC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04594 434 SUPERFAMILY Cysteine proteinases 58 404 IPR038765 -
Vifa3g04594 434 Gene3D Cysteine proteinases 55 409 - -
Vifa3g04594 434 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 62 77 IPR018200 GO:0004843|GO:0006511
Vifa3g04594 434 FunFam Ubiquitinyl hydrolase 1 55 410 - -
Vifa3g04594 434 Pfam Ubiquitin carboxyl-terminal hydrolase 61 402 IPR001394 GO:0004843|GO:0016579
Vifa3g04594 434 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 61 405 IPR028889 -
Vifa3g04594 434 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 40 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04594 Vifa-Chr3 1317175324 1317176939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04594 62 402 Miscellaneous Gene Families AT2G24640 30.372 3.71e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04594 K11366 - gmx:100806347 703.36