Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04581 ATGGCCGTCCAAAAATTCATAACCACACCAATTTTGATTTTTCTAATGACCCTTTTCTTCAACGCATCATCATCATCATCATCATCTAATGGTGTTAGATCTGCATATTGGCCTGCAGGTGGTGACTTTTCACCTTCTTCAATCAACACAAACTACTTCACTCATATTTTGTATGCTTTCATTCAACCCGAACCTGTTTCATTCAACCTTATTATCACCAAATCCGACCAAAAATGGGCCCACAACTTCACCAATGAACTCCGCCGCCATTCTCCGCCGGTGAAAACTCTTTTATCCATCGGAGGTGGTGGAAGCAACTCAAGCCTCTTCTCTGAAATCGCTAGCACAAAACAAAACAGACAAGTCTTCATAAACTCAACAATCCACGTGGCACGAAAATACGGGTTCGACGGCGTTGACTTGGATTGGGAATTTCCTCAAAATCAAAATGACATGTTTAACCTCGGTTTGTTATACGAGGAATGGTATCATGCTTTGTTTGCGGAAGCTAAGGTTGGGAGAAAGCCACGTTTACTTTTGACTTCCGCAGTTTATTATAATTCCACAATCAGACTTATTGGTAATGGGCCTAGATCATACCCGGCCCAAGCCATCAATAAATACTTAGACTGGGCCAGCCCAATGTGTTTCGACTATCACGGCTCATGGGCTAACAACACGGGCTTCAATGCTGCTTTGTATGACCCGAAGTCCGAAATCAATACACATTTTGGAATCGGGTCATGGATCAAAGCAGGCGTACGGCCCGAAAAGTTGGTTATGGGCTTAGCGCTATACGGAAGGACATGGGAACTTAAGAATCCGAATGTTAATGGAGTCGGAGCGGAAGCGGTGGGGCCCGCAGTCGATACCGATGGGAGTATGAATTATGTTGAGATTGTGAAGTTTAATCAAGAGAATGGTGCTAATGTTGTGTATGATAAGGTTGCTGTGTCTTTCTATTCTTACGCGGGAAGCACTTGGATTGGGTATGATGATGGGCTTTCTATTAGGATTAAGGTTGGGTTTGCTAAGTCATTGGGCTTAAAGGGCTATTTCTTTTGGGCTCTTGGGAAGGATAAGGGTTGGACCATCTCAAAACAAGCTTCAAATACATGGGGACACTGA 1128 0.4362 MAVQKFITTPILIFLMTLFFNASSSSSSSNGVRSAYWPAGGDFSPSSINTNYFTHILYAFIQPEPVSFNLIITKSDQKWAHNFTNELRRHSPPVKTLLSIGGGGSNSSLFSEIASTKQNRQVFINSTIHVARKYGFDGVDLDWEFPQNQNDMFNLGLLYEEWYHALFAEAKVGRKPRLLLTSAVYYNSTIRLIGNGPRSYPAQAINKYLDWASPMCFDYHGSWANNTGFNAALYDPKSEINTHFGIGSWIKAGVRPEKLVMGLALYGRTWELKNPNVNGVGAEAVGPAVDTDGSMNYVEIVKFNQENGANVVYDKVAVSFYSYAGSTWIGYDDGLSIRIKVGFAKSLGLKGYFFWALGKDKGWTISKQASNTWGH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04581 375 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 136 144 IPR001579 GO:0004553|GO:0005975
Vifa3g04581 375 SMART 2g34 31 360 IPR011583 GO:0008061
Vifa3g04581 375 SUPERFAMILY Chitinase insertion domain 266 331 IPR029070 -
Vifa3g04581 375 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 375 IPR001223 GO:0005975
Vifa3g04581 375 FunFam Class V chitinase CHIT5b 265 331 - -
Vifa3g04581 375 PANTHER CHITINASE 16 372 - -
Vifa3g04581 375 CDD GH18_plant_chitinase_class_V 30 366 - -
Vifa3g04581 375 Gene3D Glycosidases 46 361 - -
Vifa3g04581 375 Pfam Glycosyl hydrolases family 18 35 360 IPR001223 GO:0005975
Vifa3g04581 375 SUPERFAMILY (Trans)glycosidases 35 363 IPR017853 -
Vifa3g04581 375 Gene3D - 265 331 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04581 Vifa-Chr3 1313379321 1313380549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04581 1 373 Glycoside Hydrolase AT4G19810 39.467 1.55e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04581 K01183 - gmx:100787511 533.872