Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04562 ATGACTTTCTCTGCATCTTCTCTCCGTCCTACCTCATCTCCTTCCTACTCACAGTTGTTGTGCTCTCTAAGGTACAATAGGAAGCTTCGTAGCAGAATAGGTTTTGTTGTGACTCAAGGAAGAAAAGATCGCTGGTTAAGGAATGGTGTTTGTGTTAGGTCAGTGTTGAGTGATAATAGACCTAGTTTTAACAGTTATGGTGCGCCGGAATCTGCAAGGCTTCTTGAGAGGTTGTTTGAGCAGACGCACAAGCTGGAGGACCGGACGATGGCAGGAGAGGATCCGTATCTTCGTGATTTTGAGTCTGATCTTTTATCGGCGCTCATGGAATTGAAGGAGAAGGAGGATCATTTACAGGAAGTTGAGAGAACTGTTATATTGGAGAATGGGAAATTGAAGCATGCTAAAGAGGAATTAGAGCGTCAAGAGAGTGAAATTGAGGCTGCTCGCGAGAAGTATAAAAGGCTTGAAGAGGAGATGAAGGAGGCGACGGGTAGTTTGGTTTCTCAAACTGGAAAGATTGAGGAATTGAAGATCCAGCTTAGGGATCGTGATAGTGAGATTGGTGGTTTACATGATGCGTTGTCTTTGAAGGAAGAAGAGGTGGAGAAAATGAGGGTTGCTTTGGCTAAGAAGAGTGAAGAAGCTGCTAATGTTGATTCTGAGCTTAGACATAAGGTTCAGCTTCTGAGTGAAGCAAATGAGGTTGTGTACAAACAAGAAATCGAGCTTCAAGAGCTTCGGCAACTTGTACGACAAAGAGAAGATGAACTGCGTGTTACTGTGGCTGAAAGAGAATTAGAAGGAGAAAAGCTCAAGATTGCGGAGGCCTCTTTAGAAAAGCAAGCGATGGAGTGGTTGTTAACACAGGAGGAACTTAAGAGACTTGAAGAGGAAGCTTCAAAGCATGCGCGTGAGAGTAGTGAAACACTAGAGGATTTCAGAAGGGTGAAAAAGCTTCTCAGTAATGTGAAGTCTGAGTTAGTTTCATCTCAGCAATCGTTGGCGTCTTCTAGGAACAAAATGGAAGTACAGGAAAGGTTGATGGAACAGCAGCTGGCTGACCTTGCAGACCAAAGGACGAGTGTCATGTTGTACATGGAAAATTTAAAAAATGCCCAAGTAGAAGTGGAGAGTGAAAGAACGAAACTTAGGGTTGCTGAGGCTTTGAATAAAAAACTCGAACTGGATCTGTCCACAGAGAAGAAGCTCATGAACGAGTTACAGGAGGAGCTGAAGAAAGAGCGAGCTTCTTTGGAGCAGGCTGTCCAAGAAACATCCTCGCTTCAACAGGAATTAGATATAAAACGCGCCGAGTTTAAGAAAACAAGTTCTCTTCTTGATATCAAAGAGGCAGAGCTTGTTGATGCTAAGCTAGAAATCCAGCAATTGAAATCTGAAAAGGCTTCTCTTCAGATTCTTTTAGAGGAGAAAGACTTGGAACTTTCCAGTGCTAGGAAGATGCTGGTGGAACTAAACCAGGAAATCTCTGATCTTAAGATGCTTATGAACAACAAAGAAACACAGCTTATTGAAGCAACCAATATGTTAAGGGAGAAAGATGAGCATGTGAAGGTAATCGAGAATAAGCTGAATAATACAACCCTGAAGGCTTTTGAAGCCGAAACTGTAGTAGAACGAGTTTTAGATCTAACAAACAAACTGGTTGCTTCCATTAAGAATGAAGAAGACATCATCAATTCATCAAGACCACTAGATGAATTGAGCGGTCAACTAACCATGCAACTTTCCGAGGAGCCTACTAATGAATTGAGTTTAAAACAAAAACGGCTTGAGAATGTGCTCGAGCTGACCAAGGAAAGCTTAAAAACAAAGGAGATGGAAATTCTTGCAGTACAGAAGGCTCTAACAATAAAAGATGAGGAGCTTAAAATGACTATTGCGAGATTGGAAGCGAAAGAGAAAGAGTTAAGAGGAGCAAGGGACAAGGTGATAGAAGATGCTAATGATCATAAAATGCCGCATGCTTTGGCGCAGACGAGAATCGATGAGAAAAATATGGATGACTTGGCAATAGAGAAGCTTCAGCTTGAGGTTAAAGCTGCTACTAGTGCTCTGCAGAAACTTGCTGAAATGAGTCAACAACTTTTGAATAAAACCATCCCGAGTGTTGAAGCTGATAGCTATATCAGTGCCATGCAAAATAACAATGACATTAAACTCGATTTAATCTCAAATATCAATTGCATAGACTGTTTAGCTGTGGTGAAAGCAGGAGTTGCTCGACTCTCGGCATTGACGGAGCAACTTGTGTCGGATGCTGGTCTTATAGCTGCAAGCTAG 2304 0.4206 MTFSASSLRPTSSPSYSQLLCSLRYNRKLRSRIGFVVTQGRKDRWLRNGVCVRSVLSDNRPSFNSYGAPESARLLERLFEQTHKLEDRTMAGEDPYLRDFESDLLSALMELKEKEDHLQEVERTVILENGKLKHAKEELERQESEIEAAREKYKRLEEEMKEATGSLVSQTGKIEELKIQLRDRDSEIGGLHDALSLKEEEVEKMRVALAKKSEEAANVDSELRHKVQLLSEANEVVYKQEIELQELRQLVRQREDELRVTVAERELEGEKLKIAEASLEKQAMEWLLTQEELKRLEEEASKHARESSETLEDFRRVKKLLSNVKSELVSSQQSLASSRNKMEVQERLMEQQLADLADQRTSVMLYMENLKNAQVEVESERTKLRVAEALNKKLELDLSTEKKLMNELQEELKKERASLEQAVQETSSLQQELDIKRAEFKKTSSLLDIKEAELVDAKLEIQQLKSEKASLQILLEEKDLELSSARKMLVELNQEISDLKMLMNNKETQLIEATNMLREKDEHVKVIENKLNNTTLKAFEAETVVERVLDLTNKLVASIKNEEDIINSSRPLDELSGQLTMQLSEEPTNELSLKQKRLENVLELTKESLKTKEMEILAVQKALTIKDEELKMTIARLEAKEKELRGARDKVIEDANDHKMPHALAQTRIDEKNMDDLAIEKLQLEVKAATSALQKLAEMSQQLLNKTIPSVEADSYISAMQNNNDIKLDLISNINCIDCLAVVKAGVARLSALTEQLVSDAGLIAAS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04562 767 Coils Coil 367 439 - -
Vifa3g04562 767 Coils Coil 230 313 - -
Vifa3g04562 767 Coils Coil 630 654 - -
Vifa3g04562 767 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 85 692 - -
Vifa3g04562 767 Coils Coil 447 509 - -
Vifa3g04562 767 Coils Coil 679 706 - -
Vifa3g04562 767 Coils Coil 104 173 - -
Vifa3g04562 767 Coils Coil 339 359 - -
Vifa3g04562 767 Coils Coil 195 215 - -
Vifa3g04562 767 Coils Coil 595 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04562 Vifa-Chr3 1307245506 1307248971 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04562 - - gmx:100789623 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04562 3 1307245506 1307248971 Vifa3g04562 3 1307245506 1307248971 ECH