Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04516 ATGCGACGCACTCCTCCGAGTACCAACTTCCTTGCCGTCACCGACGCCGCCTTCTCCACCGCCACAATGTCTACACGTCCTCACCACCGAGGTCCCCGTAGAGGATACTCCGGCCGATCGTACCCCGGCGGGAGAGACCAGTTCGTTACCGGAGACGATCACTTACAGTCAGTCCGCGACGCCAATTCAGCAATCCGGCAAGGCGAGAGAGGAAGCTCTGCGAATCAAACGCAGTACTATCAGAATCCACCTCACGATCCGAGGCCTTATCCGCCGCCTCAATATCAGAATCAGAATCAGTTTTACAATCCAAGGCCTCGTCCGAATCCTCATCAGCCACCGCATTTTCGGCAGCCGTATGATCACCGGCGTGATTTTCGTCTGCCACAGAATTTTCGCCCGAAGCCGCAGGATTATCGAGAGTGGGAGCTTGCTTTGACACCGCCACCTCCTCATTGTGCAGAAAGGTTTAAAGTTCTTTCCTATAATATATTGGCCGATTACCTTGCTATGGACCACTGGAGAAAACTTTACTATCATGTACCTCCTTACATGTTGAACTGGCAGTGGAGAAAGAGTAAAATAATTTCTGAGCTTGGCTTGTGGTCTGCCGATATCATGTGTTTTCAGGAGGTTGATAAATTTGATGAGTTAGTGGAGGATTTGAAGTTTAAAGGATACAGAGGCATCTGGAAGATGCGTACGGGCAATCCAGTTGATGGTTGTGCAATCTTTTGGCGAACATCAAGGTTCAATTTGTTATATGAAGGATGCATAGAGTTCAATAAGTTGGGTCTTAGAGACAATGTTGCTCAAATATGTGTACTAGAGCTCGTTAATCAAAATGGTTCTCTCCCGCCCAGCTTGACAGGTTCTCGTAAAGTTGTGGTTTGCAACATTCATGTGCTTTACAATCCAAATAGAGGAGAAATTAAGCTTGGCCAGGTCAGAGTCCTACTGGATAAGGCTCAAGCTGTTTCTCAACTTTGGAATAATTCCCCTATTATTATCTGTGGGGATTTTAATTGTACCCCTAAGAGTCCATTATACAACTTTATCGCAGAACAAAAGTTAGATCTATCTGGAATTGATAGGAATAAAGTATCAGGGCAAGCTTCTGCTGTAATTCGTGCACCATGGGCTTATGGTCCTAATTCTAGGGAAAAAACATTTGCTAATGGTTCAGTTCAGACCGCATCCGCTGAAGGTGACAAGGGAGTTACTATTGAACAAAATAGTTCTTTGTCAGACATGCAGAATCTAACCACTGAGAGTAGCAGTTCTGAAAATCAAGATTGCCGCCCTGCTTTGGATATGTCTAATCCGATAAATGTGCAGTGTAGTAGGGAGAGTGATGCATGTGCAGGAAAAGATACTCGGGGGGCTGTTCACCATAATACGGTTTTTGGTGAAGTTGATGGCATGACAGAAGTGCCAAATCCTTCTAATCATATTGGTAGAAGACTCCCAACTGATCATATAAATGATGATGAAATTCATGATGTCACACCTATAACGTCTTCAGCTCTTGAGACAGTTTACACTAACCCAACCGGGATAGGAAACACAGAACATATATCAGACGCTATCTCAACTTCAAGTCAAGAATCATTGAGTGAAAACTCCAACTTGCATGAACATGAAGGGAATAGGCTCGAAGAGTCTAACTGTTCCCCAACGTCTCTTCAAGAAGGTGATCAAACTTCAAAGGTGGAGATAGATCTTGAGTCAACAGATCTTAACCAAGAAGTATCTTCAAATAAACCATTGAGCAAGACTTCAGTTTCTAATGACCAAACGAATTGCTCATCAATTGCATATCTAGTTGACGAATCACGAACACCTACCAACTTTGACTTTACTCTAAATGAAAAACTAGAGAATTTTTCCCTTGATGATATAGATAAAGCTGATGTAAGCATTGTGGATGTTGGTGAAGATGCCATTGACTTCATAAATGCCTTACATAATGCCGAAGAAGAAAGCAATGAAGTGAAGGATGACTTATTTCCAAGTTCGATTTCCAAATCTATTGATGCAGAGAAAACTACTTATAATCCATCATTGTGGACCCCTGCTGAGATAGAAACTGCAACAGGAAATGCAGAGAGCACATTCTTGGAGCACCCTTTACTGCTCAAGAGCACATACACTGAAGCTACGAACTCTTCAGGGACTAGAGACCCCAATGGCGAACCCTTAGTAACCAGCTACAACAAGTGCTTCTTGGGCACTGTTGACTATATTTGGCGATCTCAAGGTCTGCAAACAACTAGAGTTCTTGCTCCAATACCTAAACATGTCATGGAAAGCTCTCAAGGATACCCAACTAAGAGATGGGGTAGCGATCATATTGCCTTGGTTTCAGAGTTAGCTTTCTTAGAAGATGGTACTACCATCATCAGCAAGGATGTTGTATAG 2421 0.4333 MRRTPPSTNFLAVTDAAFSTATMSTRPHHRGPRRGYSGRSYPGGRDQFVTGDDHLQSVRDANSAIRQGERGSSANQTQYYQNPPHDPRPYPPPQYQNQNQFYNPRPRPNPHQPPHFRQPYDHRRDFRLPQNFRPKPQDYREWELALTPPPPHCAERFKVLSYNILADYLAMDHWRKLYYHVPPYMLNWQWRKSKIISELGLWSADIMCFQEVDKFDELVEDLKFKGYRGIWKMRTGNPVDGCAIFWRTSRFNLLYEGCIEFNKLGLRDNVAQICVLELVNQNGSLPPSLTGSRKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAQAVSQLWNNSPIIICGDFNCTPKSPLYNFIAEQKLDLSGIDRNKVSGQASAVIRAPWAYGPNSREKTFANGSVQTASAEGDKGVTIEQNSSLSDMQNLTTESSSSENQDCRPALDMSNPINVQCSRESDACAGKDTRGAVHHNTVFGEVDGMTEVPNPSNHIGRRLPTDHINDDEIHDVTPITSSALETVYTNPTGIGNTEHISDAISTSSQESLSENSNLHEHEGNRLEESNCSPTSLQEGDQTSKVEIDLESTDLNQEVSSNKPLSKTSVSNDQTNCSSIAYLVDESRTPTNFDFTLNEKLENFSLDDIDKADVSIVDVGEDAIDFINALHNAEEESNEVKDDLFPSSISKSIDAEKTTYNPSLWTPAEIETATGNAESTFLEHPLLLKSTYTEATNSSGTRDPNGEPLVTSYNKCFLGTVDYIWRSQGLQTTRVLAPIPKHVMESSQGYPTKRWGSDHIALVSELAFLEDGTTIISKDVV 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04516 806 MobiDBLite consensus disorder prediction 63 121 - -
Vifa3g04516 806 Gene3D Endonuclease/exonuclease/phosphatase 550 802 IPR036691 -
Vifa3g04516 806 Gene3D Endonuclease/exonuclease/phosphatase 130 433 IPR036691 -
Vifa3g04516 806 MobiDBLite consensus disorder prediction 530 598 - -
Vifa3g04516 806 Pfam Endonuclease/Exonuclease/phosphatase family 160 361 IPR005135 GO:0003824
Vifa3g04516 806 MobiDBLite consensus disorder prediction 554 568 - -
Vifa3g04516 806 SUPERFAMILY DNase I-like 151 359 IPR036691 -
Vifa3g04516 806 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 100 793 - -
Vifa3g04516 806 MobiDBLite consensus disorder prediction 21 51 - -
Vifa3g04516 806 MobiDBLite consensus disorder prediction 63 83 - -
Vifa3g04516 806 MobiDBLite consensus disorder prediction 578 598 - -
Vifa3g04516 806 MobiDBLite consensus disorder prediction 398 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04516 Vifa-Chr3 1293391563 1293401017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04516 188 356 EF-hand Containing Proteins AT5G54130 28.889 2.56e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04516 - - psat:127091484 904.82