Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa3g04503 | ATGGGTAGTGAGAATGAAATGATCCCATGTCTAGATTTTTCAGGAGTTGATGATGAAGGTGAAGGGAGTGAGAAATGGGAAAAAATGAGTAAAAAAGTGAGAGAAGCATTAGAGAGTTATGGTTGTTTCATATTAATGTATGATAAGAATAAAATTCCAAAGAGTTTTTGTGAGAACATGTTACTAGGAATGAAAGAGTTGTTTGATTTACCAGAAGAGATTAAGAAGAAGCATGTAAGTACTAGGCCTTACAGCAGCTACAAAAGTGATTGTCCTAAGTTTCCTCTAACTCAAACGTTTGGAATTGATGATGTTTTTGTTGAGGATAATGCTCTTGATTTTACTAATCTCATGTGGTCTCAAGGAAATCCAACCTTCAGTGAGACAATGAAGTCCTTGAGCTCCAAGATGCATGAATTGAGTTTTCTTATTCTGAAGATGATTAAAGATAGTTATGATCTTCCAAAACAATACTCATTAGATATTGAAGACTTGAAGAATACCGGTCATTTACGATTGATGAAATACAAAACTCCTAAAACCAACCAAGATTGTGAAACAGCTTTGTTACCACATACAGACAAAAGTACTATAACCATGTTATACCAAAATGAAGTCCAAGGTTTACATGTTCAAACCAAAGCAAAAAAATGGATTCAATTGAACATACCTCAAGAAGGCTTCATTGTCATTGTTGGTGACATACTCAAGGCATGGAGTAATGGAAGAATTCATGCACCTGCACACAAAGTGGTGATGTGTGGAGACAAAGAAAGATACTCATTTGCTGAATTTACACTTCCAAAAAAAGATGTGAAAATTGAGGTACCAAGTGAATTGGTGGATGGTGAAGTGCATCCTCTACGTTATCGTTCATTCACTTATGGTGATTATTTAGAGTACTTTGTTTCAACCCTTAAAGAAAATGCACTAGAAGAATATATAGGTATTTGA | 954 | 0.347 | MGSENEMIPCLDFSGVDDEGEGSEKWEKMSKKVREALESYGCFILMYDKNKIPKSFCENMLLGMKELFDLPEEIKKKHVSTRPYSSYKSDCPKFPLTQTFGIDDVFVEDNALDFTNLMWSQGNPTFSETMKSLSSKMHELSFLILKMIKDSYDLPKQYSLDIEDLKNTGHLRLMKYKTPKTNQDCETALLPHTDKSTITMLYQNEVQGLHVQTKAKKWIQLNIPQEGFIVIVGDILKAWSNGRIHAPAHKVVMCGDKERYSFAEFTLPKKDVKIEVPSELVDGEVHPLRYRSFTYGDYLEYFVSTLKENALEEYIGI | 317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa3g04503 | 317 | PANTHER | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 8 | 299 | - | - | |
| Vifa3g04503 | 317 | FunFam | 2-oxoglutarate-dependent dioxygenase DAO | 6 | 315 | - | - | |
| Vifa3g04503 | 317 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 8 | 88 | IPR026992 | - | |
| Vifa3g04503 | 317 | PRINTS | Isopenicillin N synthase signature | 228 | 254 | - | - | |
| Vifa3g04503 | 317 | PRINTS | Isopenicillin N synthase signature | 192 | 213 | - | - | |
| Vifa3g04503 | 317 | PRINTS | Isopenicillin N synthase signature | 294 | 312 | - | - | |
| Vifa3g04503 | 317 | Pfam | 2OG-Fe(II) oxygenase superfamily | 172 | 266 | IPR044861 | - | |
| Vifa3g04503 | 317 | SUPERFAMILY | Clavaminate synthase-like | 8 | 305 | - | - | |
| Vifa3g04503 | 317 | Gene3D | - | 5 | 314 | IPR027443 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa3g04503 | Vifa-Chr3 | 1287651884 | 1287653154 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa3g04503 | 8 | 302 | Glycosyltransferase | AT5G59530 | 23.301 | 2.03e-10 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa3g04503 | - | - | aip:107648447 | 373.629 |