Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04499 ATGGATCATGCATACCCCATCATTGATCTCAAGGATCCTAATGCAATGGAAGAAATAGGCCTTGCATGTGAGAAGTGGGGTGCCTTCCAATTGAAGAACCATGGTATACCATTAAATTTAATTGAAGAGGTTCATGAAGAAGCAAAGAGACTCTTTTCCCTTCCTTCTAAAGAGAAAATTAAGGCTCTAAGATCGGCCGGCGGCGCCACCGGTTACGGTAGTGCTCGAATATCCCCGTTCTTCCCTAAATTTATGTGGCATGAAGGATTCACAATCATGGGGTCACCGTCTAATGATGTCAAAGAGATCTGGCCTAATGACTACAAATATTTTTGGTAA 339 0.4248 MDHAYPIIDLKDPNAMEEIGLACEKWGAFQLKNHGIPLNLIEEVHEEAKRLFSLPSKEKIKALRSAGGATGYGSARISPFFPKFMWHEGFTIMGSPSNDVKEIWPNDYKYFW 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04499 112 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 6 100 - -
Vifa3g04499 112 Pfam non-haem dioxygenase in morphine synthesis N-terminal 6 105 IPR026992 -
Vifa3g04499 112 SUPERFAMILY Clavaminate synthase-like 5 111 - -
Vifa3g04499 112 Gene3D - 1 111 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04499 Vifa-Chr3 1287310781 1287311119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04499 2 65 Glycosyltransferase AT5G59530 33.333 4.75e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04499 K04124 - gmx:100818754 185.267