Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04495 ATGCATTCTCTGAACTCTCATCGTATAAAATACTCCCTTCGTTTATTGCTATCATCAACCCTCAAACCAAACCCATTCTCCTCCTCTTCTTCTTCTTCTTCTTCATGGCTATCCCAACCCGGAAACCCACTCATCCACTGGCCACCCCTCCCACCAAACCAACCCAAACCCGCTCTAAACCCAAACCCAAACCCAAACCCAACCCCAACCCCAAACCCTCCTCCACCCAACCCCAATTTCTCTGTCATTTCCAATCTCTTCACCAACCCATCCATCTCCCCCGGTTCAGTCCTCCACACCGAACTAAACCAAACCGGAATCAAACCGGATTCCCCTCTCCTCAACGCCGTGTTCCAACATTTCGCCTCCTCCCCGAAATTACTACACTCGCTTTTCCTATGGGCTGAGAATCAACCCGGGTTCAGACCCGATTCAGCTTTATTTGACTCACTGGTTAACGCTCTTGCGAAAATGAGGGAGTTTCACTCGGCCTGGACTCTTGTTCTTGATCGCATTGAAAGAGATGAGGGAGAACATGACAAATTAGTTTCCGTTGGTACATTTGCTATCATCATTCGACGCTATGCTCGCGCAGGTATGCACAAGGCTGCTATTAGGACGTTTGAGTTTGCAAAAGATAAGAAGGCAATTGTGGATTCGGGATCAGAAATGAGTTTATTTGGGATATTGATTGATTCACTTTGCAAAGAAGGGTCTGTTAGGGAAGCTTCAGAGTATTTCTTTAGGAGAAAGGAGACAGACCTGGGTTGGGTTCCTTCAATTCGGATTTATAACATATTGTTAAACGGATGGTTTCGAGCAAGGAAACTCAAACATGCTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAAACCCAGTGTTGTGACATACGGTACCCTTGTGGAAGGATATTGTCGGATGCGCCGTGTTGAAAAAGCGCTTGAGATGATTGGTGAAATGACGAAAGAGGGAATAGAACCCAATGCAATTGTATATAACCCCATAATCGATGCATTGGCAGAAGATGGGAGATTTAAAGAGGCTTTGGGTATGATTGAGCGATTTCATATTTTGAAAATAGGTCCTACCCTTTCAACTTACAACTCTCTGGTGAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCTAGTAAGATTCTAAAAAAGATGATAAGTAGAGGTTTTCTTCCAATCCCCACTACCTATAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGACGAAGGAATGAACCTGTATACCAAGATGATTGAATCTGGACATAGCCCGGATCGTCTAACATACCATCTTGTGTTGAAAATGTTATGCGAAGAGGAGAAGTTAGAGTTGGCAGTTCAAGTTAGTAAGGAAATGAAGCATAAAGGACATGACATGGACTTGGCTACGAGTACCATGTTAACTCATTTGCTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAATTTGAGAGCATGATAAGAAGAGGTATAGTTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGCTAAAGAAACAAGGTATGATTGAAATGGCTCGAAAACTTTGCCACTTGATGTCGTCTGTTCCACATTCTTCCAACTTGCCAAATACATATGGTGAAGTCAGAGAGGAAGCACATGCCCGTAGGAAATCAATAATTCAGAAAGCCAAAGCATTTTCTGATTTGCTGAAGTTCCCCAATGAAATTGATAAGTTGAGAAGTTCATCCAAAGATGCAGTCCCAAATGCAAACTGTTTGATAGAGGATATTGAGAAAAAGACGGGCGTAAGATGA 1815 0.4242 MHSLNSHRIKYSLRLLLSSTLKPNPFSSSSSSSSSWLSQPGNPLIHWPPLPPNQPKPALNPNPNPNPTPTPNPPPPNPNFSVISNLFTNPSISPGSVLHTELNQTGIKPDSPLLNAVFQHFASSPKLLHSLFLWAENQPGFRPDSALFDSLVNALAKMREFHSAWTLVLDRIERDEGEHDKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKAIVDSGSEMSLFGILIDSLCKEGSVREASEYFFRRKETDLGWVPSIRIYNILLNGWFRARKLKHAERLWEEMKKENVKPSVVTYGTLVEGYCRMRRVEKALEMIGEMTKEGIEPNAIVYNPIIDALAEDGRFKEALGMIERFHILKIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHSPDRLTYHLVLKMLCEEEKLELAVQVSKEMKHKGHDMDLATSTMLTHLLCKMHKLEEAFAEFESMIRRGIVPQYLTFQKLNVELKKQGMIEMARKLCHLMSSVPHSSNLPNTYGEVREEAHARRKSIIQKAKAFSDLLKFPNEIDKLRSSSKDAVPNANCLIEDIEKKTGVR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04495 604 Gene3D Tetratricopeptide repeat domain 113 248 IPR011990 GO:0005515
Vifa3g04495 604 Gene3D Tetratricopeptide repeat domain 324 392 IPR011990 GO:0005515
Vifa3g04495 604 Gene3D Tetratricopeptide repeat domain 249 323 IPR011990 GO:0005515
Vifa3g04495 604 Gene3D Tetratricopeptide repeat domain 393 571 IPR011990 GO:0005515
Vifa3g04495 604 Pfam PPR repeat 227 248 IPR002885 -
Vifa3g04495 604 Pfam PPR repeat 333 356 IPR002885 -
Vifa3g04495 604 Pfam PPR repeat 364 392 IPR002885 -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Vifa3g04495 604 MobiDBLite consensus disorder prediction 23 81 - -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vifa3g04495 604 Pfam PPR repeat family 403 447 IPR002885 -
Vifa3g04495 604 Pfam PPR repeat family 259 308 IPR002885 -
Vifa3g04495 604 SUPERFAMILY HCP-like 261 436 - -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vifa3g04495 604 MobiDBLite consensus disorder prediction 23 41 - -
Vifa3g04495 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vifa3g04495 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 45 529 - -
Vifa3g04495 604 NCBIfam pentatricopeptide repeat 263 296 IPR002885 -
Vifa3g04495 604 NCBIfam pentatricopeptide repeat 332 364 IPR002885 -
Vifa3g04495 604 NCBIfam pentatricopeptide repeat 368 399 IPR002885 -
Vifa3g04495 604 NCBIfam pentatricopeptide repeat 403 435 IPR002885 -
Vifa3g04495 604 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Vifa3g04495 604 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04495 Vifa-Chr3 1286784341 1286787296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04495 82 528 Miscellaneous Gene Families AT4G11690 25.223 2.17e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04495 - - gmx:100793484 814.298