Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04473 ATGGCAACGGTTTCAAAGATATCGTCACTCTTATCATTATCCAAACCTAAACTCATTCACCACACCAATTCCTTTCTTTTCCCCTCTTCAAAACTCAGAACCCTCAGCAGCAGCAACAACATCACCACGAGAATCACAAAGAAGAAGACAGAAGCAGCACTTGCCAAAGAAAAGAGACGAACGCGTTCCGACAAAGAACTCGACAAGGACACAATTATTGAGCTTTACAACAACAACTCTCATCTTCATATTCCTGTTATGCTTTCTGAAGTCTTGGATGTTTTCTCGAATTGCTCATTAATCTCTTTCGTTGATTGTACTCTTGGTGCAGCTGGTCACTCCACCAATGTGATTAGAGGGCATCCAGAGTTGAAGTATTTTGTAGGGATTGATGTGGATCCTGTGGCAAGTGATGTAGCCCAATCGCGGATCAGTTCAGTTTTGGAGGATAATGAGTCTAGTGTGAAAGTGTTTACCATGTTAAAGAATTTTAGACACATTAAGTCTGTGCTTAGAGGAACGGGCGAGGAACATTTGGGGGTTGGGTCTATTGATGGAATTTTGATGGACCTTGGAATGTCATCTATGCAGGTGGATGATCCTCAAAGAGGATTCAGTGTGCTTGGTGATGGACCCCTTGATATGCGTATGGATCCTCAGGCAAGCCTTAAAGCAGAAGACATACTAAATTCTTGGCCAGATACTGATGTGGGCCGTATCCTAAGGGATTACGGGGAAGAAAGTAATTGGCGCACTCTGCAGAAGAAAATTGTCCAAGCCCGTTTAGAAGGTGGATTTCATTCCACTACCGACTTGCTGGGTCTTATTAAGCGCGTGACTCCTCCAATGAAAAGTGGAAGGCAAGGTTGGATAAAGACAGCAACCCGAGTATTTCAAGCATTGAGAATCGCGGTCAATGATGAACTGAAGACTCTCGAGGATTCTCTGTATTCTTGTTTTGACTGCCTTGCACCTGGGGGCAGGCTTGCTGTCATATCCTTTCACAGTTTGGAGGACAGAATTGTGAAGCAAACATTTCTTAACATAATTAAAGGGAATGAAGACACGGGCGAAGGGGAAAGCTGCAATAGTGATCTGAGGAAGATGATTGATGGAATCAAAGAAAAAGAAGCATGGATAAAACAAGTAATGCATGGATCAAAAGGTTTGGTTCTCACAAAAAGACCAATCACGCCATCAGAAGAAGAGGAGGAATTGAACCGCCGAAGTAGAAGTGCAAAGCTCAGAGTTATTCAGAAGCTTTGA 1266 0.4313 MATVSKISSLLSLSKPKLIHHTNSFLFPSSKLRTLSSSNNITTRITKKKTEAALAKEKRRTRSDKELDKDTIIELYNNNSHLHIPVMLSEVLDVFSNCSLISFVDCTLGAAGHSTNVIRGHPELKYFVGIDVDPVASDVAQSRISSVLEDNESSVKVFTMLKNFRHIKSVLRGTGEEHLGVGSIDGILMDLGMSSMQVDDPQRGFSVLGDGPLDMRMDPQASLKAEDILNSWPDTDVGRILRDYGEESNWRTLQKKIVQARLEGGFHSTTDLLGLIKRVTPPMKSGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGGRLAVISFHSLEDRIVKQTFLNIIKGNEDTGEGESCNSDLRKMIDGIKEKEAWIKQVMHGSKGLVLTKRPITPSEEEEELNRRSRSAKLRVIQKL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04473 421 Pfam MraW methylase family 82 420 IPR002903 GO:0008168
Vifa3g04473 421 FunFam Ribosomal RNA small subunit methyltransferase H 201 308 - -
Vifa3g04473 421 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 83 421 IPR002903 GO:0008168
Vifa3g04473 421 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 421 IPR029063 -
Vifa3g04473 421 NCBIfam 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH 79 420 IPR002903 GO:0008168
Vifa3g04473 421 Gene3D Vaccinia Virus protein VP39 83 418 IPR029063 -
Vifa3g04473 421 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 77 421 IPR002903 GO:0008168
Vifa3g04473 421 SUPERFAMILY Putative methyltransferase TM0872, insert domain 203 306 IPR023397 GO:0008168
Vifa3g04473 421 Gene3D Putative methyltransferase TM0872, insert domain 201 308 IPR023397 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04473 K03438 - gmx:100803819 556.984