Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04444 ATGAATGCGGTTATGGAAGCTTGTGTTTGTTGCGGTGATATCGATTCGGTTATTAGGATTTTCGAAGAGATGAAATGTACAGAAGGTTGTGGCGTGGATACTGTCACCTATGCTACACTTTTGAAGCTAATTTTTACTGATAAGGAAAGTTTAATGTCTTCCAAAGTTGTCAGCACCATTGGTCTTGGTTTGCTAAATGCCTTAACTGATGCAGGAGACTTGCGTCGCGAACATTTTTCAGTTTCAGTATACAACCTACTAATGAAGGGGCATATAAACTCAGGCTGTCCTGACGCTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGCTCACGTACAACACACTCATTTTAGCATGTGTTCAGAGTGGAAAAGTTGGATGTTGCCATGCAATTATTTGCAGAAATGAAGGAAAAAGCGGAGAGAATTTTTCTGTGATGATCTGTTTCCAGATATTGTTACATACACAACATTGCTCAAGGGTTGTGGGCAGGCAAATGATCTCAACTGCTTACACTGCAACAGTTGATGCTTTACTAAAATGTGGCTCATTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCAGATACTGCAGGAACCATCTTACCAGTTGGCCCAAGAAGAAGCCGACCACCTTCTAATGGAAGCAGCCCTGAACGCTGGCCAGGTGATGTCGCTATTAAAACTCTTAGGTATATTCTTTCAAGATGGAAGGGCATATCCTGGACAAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTGTGGGATTCTCAGCATCTTTATTCAATCCTTTCTTACTTCCTCAGGTACTAACTAA 849 0.4134 MNAVMEACVCCGDIDSVIRIFEEMKCTEGCGVDTVTYATLLKLIFTDKESLMSSKVVSTIGLGLLNALTDAGDLRREHFSVSVYNLLMKGHINSGCPDAAINMLNEILHQGIMPDRLTYNTLILACVQSGKVGCCHAIICRNEGKSGENFSVMICFQILLHTQHCSRVVGRQMISTAYTATVDALLKCGSFKGALCIFGEIQKQILQEPSYQLAQEEADHLLMEAALNAGQVMSLLKLLGIFFQDGRAYPGQVMEAWLLLVLRPCGILSIFIQSFLTSSGTN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04444 282 NCBIfam pentatricopeptide repeat 2 33 IPR002885 -
Vifa3g04444 282 NCBIfam pentatricopeptide repeat 83 115 IPR002885 -
Vifa3g04444 282 Gene3D Tetratricopeptide repeat domain 2 240 IPR011990 GO:0005515
Vifa3g04444 282 Pfam PPR repeat family 81 126 IPR002885 -
Vifa3g04444 282 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Vifa3g04444 282 PANTHER OS09G0431600 PROTEIN 176 209 IPR044781 -
Vifa3g04444 282 Pfam PPR repeat 2 25 IPR002885 -
Vifa3g04444 282 Pfam PPR repeat 177 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04444 Vifa-Chr3 1272594792 1272598078 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04444 - - gmx:100813146 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04444 3 1272594792 1272598078 Vifa3g04444 3 1272594792 1272598078 ECH