Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04431 ATGTCTCGTGTGTATGTGGGTAATCTGGACTCGAGAGTCACCGAGAGGGACCTTGAAGATGAATTCCGTGTGTTTGGTGTTATTCGAAGTGTCTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGATCGTCGAGATGCACAGGATGCTATTAGGGAGTTAGATGGCAAGAGTGGTTGGAGGGTCGAGCTTTCTCACAATTCTAGAACTGGTGGCGGTGGCGGTGGTGGTGGTCGTGGTCGCGGTGGTGGCGGTGGTGGAGGCGGTTCTGACCTAAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCCCGTGAATGTCGCAATCGTGGTGGTTCAGGAAGACGCCGCAGCCGTAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTTCAGTCCTCGTGGGCGATCCCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGCCCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCAGAAGCAGAAGTTGA 564 0.5443 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKSGWRVELSHNSRTGGGGGGGGRGRGGGGGGGGSDLKCYECGEPGHFARECRNRGGSGRRRSRSPPRFRRSPSYGRRSFSPRGRSPRRRSVSPRGRSYSRSPPPYRAREEVPYANGNGIRDRRRSRS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04431 187 CDD RRM_SRSF3_like 3 71 - -
Vifa3g04431 187 Gene3D - 1 97 IPR012677 -
Vifa3g04431 187 SUPERFAMILY Retrovirus zinc finger-like domains 88 115 IPR036875 GO:0003676|GO:0008270
Vifa3g04431 187 ProSiteProfiles Zinc finger CCHC-type profile. 97 113 IPR001878 GO:0003676|GO:0008270
Vifa3g04431 187 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 166 - -
Vifa3g04431 187 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Vifa3g04431 187 FunFam Serine/arginine-rich splicing factor RSZ22A 94 154 - -
Vifa3g04431 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vifa3g04431 187 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Vifa3g04431 187 Gene3D - 98 152 - -
Vifa3g04431 187 SMART c2hcfinal6 97 113 IPR001878 GO:0003676|GO:0008270
Vifa3g04431 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vifa3g04431 187 MobiDBLite consensus disorder prediction 102 117 - -
Vifa3g04431 187 Pfam Zinc knuckle 97 112 IPR001878 GO:0003676|GO:0008270
Vifa3g04431 187 MobiDBLite consensus disorder prediction 66 187 - -
Vifa3g04431 187 SMART rrm1_1 3 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04431 Vifa-Chr3 1269086006 1269088233 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04431 K12896 - sspl:121745482 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04431 3 1269086006 1269088233 Vifa3g04431 3 1269086006 1269088233 ECH