Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa3g04163 | ATGGCAACCCCTTCACTCGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTGAGTTTTACTTCAGCGATAGCAACCTCCCCAGGGATGATTTCCTCAGAAAAACTGTCACTGAAAGTGAAGACGGAATGGTTAGTTTGGCATTGATTTGTTCATTCAATCGGATGCGAAAGCATCTTAATTTGGGTGATGTTAAACCCAGTGAAGTAAAGGATGACACTGTCAAAGCTGTTGCCGAGGTTTTGAAAAATGCTGCTTCACTCAAGCTCTCAGAAGATGGGAGCAAAGTTGGTAGGATTACTGAACTTTCCAAGCCAGAAGAGGTAGTTGAGCAGGTTGAGATAAGAACAATTTCTGCATCACCGTTTGAATATAATGTGAAGCTTGAAGAAGTGGAGTCATTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGTCTGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGTACTGCCCTTGTTGAGTTTTCATCAGATGAAGAATTGCAAAATGTTTTGAAGCAAAAATTGGTGTATGCGGGTGCTGAGCTAGAACTAAAGCCAAAGAAGGACTTCGATGCTGAAAGAGAAATAGAGTTAGAAAAGCATGAAAAATGTTGTAAATCTGTGAACTCAAACCACGAGGAGGAAGACCCAGAAGCAAACTATCCTAAAGGCTTACTTATAGCCTTCAAACTGAAGAGCATTTCAGAGGAAGTTCCTTCAGAAAAGAATAGCACTGATGAACAAGCCAATGGAAATAATGGTGCTACCAAGACAGATGAACAAAATCCCTCTGAAGTTGCTGCTGCTGCTGCTGAGGATAGTGATCAAAAGATGTCAGAAAATGATGGCAATGATAAAGAAAACAATGGCGTGAATGAAGAAAAAGATGCTGAAGGTAAAGAAAAGGAACAAGAAAACAATGAGGTGAAAGAAGAGAAGGCTGAAGTTGAAGAAAAGGGCCTGTTAGAGTTGTATAAGAAAAGCGGCAATGGTGTGAATGAAGGAAAGGCCACTGAAGGTGAAAAAAAGGATCAGGAAACTGAAAAACGTTCAGCTGCTTCTTACAAGGAAGACTCAGATGTTGTCTTGCGTGAGGATTTGAAGGTTATCTTTGAGAAGTTTGGTGATGTTAAGTACATAGATTTCAAAATGGGAGCTGAGTCGGGATTCATTCGGTTTGACGTACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTCTTTCTGAAAAGGGGGGCTTAGTTGTCAAGAATTTTATTGCTATTCTAGATCCAGTGACAGGTAACGCTGAAAAAGAATACTGGAGCCTGCTTCGTGGTAATCAAGATAAGCGCAGAGAAAGCTTTAATAACCGAGGGGGCTTTAATAACAGAGGAAGAGGAGGAAGGCATGGTAGAGGAGGAGGTAGATTTTTGCGGCAGAGAGAAAATGATTCTGCAGGAGGTCGCCAAAACAAATTCAGAAAGTTTTAA | 1485 | 0.4141 | MATPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVTESEDGMVSLALICSFNRMRKHLNLGDVKPSEVKDDTVKAVAEVLKNAASLKLSEDGSKVGRITELSKPEEVVEQVEIRTISASPFEYNVKLEEVESFFGQYAKVNSVRLPRHVGDKRFFCGTALVEFSSDEELQNVLKQKLVYAGAELELKPKKDFDAEREIELEKHEKCCKSVNSNHEEEDPEANYPKGLLIAFKLKSISEEVPSEKNSTDEQANGNNGATKTDEQNPSEVAAAAAEDSDQKMSENDGNDKENNGVNEEKDAEGKEKEQENNEVKEEKAEVEEKGLLELYKKSGNGVNEGKATEGEKKDQETEKRSAASYKEDSDVVLREDLKVIFEKFGDVKYIDFKMGAESGFIRFDVPEAAQKARAAAVLSEKGGLVVKNFIAILDPVTGNAEKEYWSLLRGNQDKRRESFNNRGGFNNRGRGGRHGRGGGRFLRQRENDSAGGRQNKFRKF | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa3g04163 | 494 | SUPERFAMILY | RNA-binding domain, RBD | 368 | 454 | IPR035979 | GO:0003676 | |
| Vifa3g04163 | 494 | CDD | LA_like_plant | 10 | 99 | - | - | |
| Vifa3g04163 | 494 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 207 | IPR000504 | GO:0003723 | |
| Vifa3g04163 | 494 | ProSiteProfiles | xRRM domain profile. | 350 | 475 | IPR014886 | GO:0003723 | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 340 | 361 | - | - | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 241 | 361 | - | - | |
| Vifa3g04163 | 494 | Pfam | La domain | 14 | 84 | IPR006630 | - | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 248 | 267 | - | - | |
| Vifa3g04163 | 494 | PANTHER | LUPUS LA PROTEIN-RELATED | 10 | 330 | IPR045180 | - | |
| Vifa3g04163 | 494 | SUPERFAMILY | "Winged helix" DNA-binding domain | 7 | 102 | IPR036390 | - | |
| Vifa3g04163 | 494 | Gene3D | - | 107 | 199 | IPR012677 | - | |
| Vifa3g04163 | 494 | FunFam | La protein 2 | 6 | 106 | - | - | |
| Vifa3g04163 | 494 | ProSiteProfiles | La-type HTH domain profile. | 4 | 107 | IPR006630 | - | |
| Vifa3g04163 | 494 | CDD | RRM1_La | 117 | 189 | - | - | |
| Vifa3g04163 | 494 | Gene3D | - | 339 | 457 | IPR012677 | - | |
| Vifa3g04163 | 494 | PRINTS | Lupus La protein signature | 17 | 34 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vifa3g04163 | 494 | PRINTS | Lupus La protein signature | 157 | 175 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vifa3g04163 | 494 | PRINTS | Lupus La protein signature | 43 | 58 | IPR002344 | GO:0003723|GO:0005634|GO:0006396|GO:1990904 | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 279 | 328 | - | - | |
| Vifa3g04163 | 494 | SMART | rrm1_1 | 363 | 421 | IPR000504 | GO:0003723 | |
| Vifa3g04163 | 494 | SMART | rrm1_1 | 117 | 189 | IPR000504 | GO:0003723 | |
| Vifa3g04163 | 494 | SUPERFAMILY | RNA-binding domain, RBD | 108 | 192 | IPR035979 | GO:0003676 | |
| Vifa3g04163 | 494 | SMART | la | 8 | 100 | IPR006630 | - | |
| Vifa3g04163 | 494 | Pfam | RNA binding motif | 366 | 457 | IPR014886 | GO:0003723 | |
| Vifa3g04163 | 494 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 177 | IPR000504 | GO:0003723 | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 473 | 494 | - | - | |
| Vifa3g04163 | 494 | MobiDBLite | consensus disorder prediction | 450 | 494 | - | - | |
| Vifa3g04163 | 494 | Coils | Coil | 292 | 326 | - | - | |
| Vifa3g04163 | 494 | Gene3D | - | 6 | 106 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa3g04163 | Vifa-Chr3 | 1227677371 | 1227680767 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa3g04163 | K11090 | - | gmx:100803099 | 564.303 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa3g04163 | 3 | 1227677371 | 1227680767 | Vifa3g04163 | 3 | 1227677371 | 1227680767 | ECH |