Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04159 ATGGCGTTTCTCCGCTTCCTTCCGCAACCACTCAATTCATTATCATCCCCTCATTTCCTCCATCATCATCATCATCATCATCATCATCATCATCACCGTCAACGTCTTTCCTTTCCTCAACAACAACAACAACATCGTCTCTATTTTCCCGTCATAAAAACTAGTGCTCTCTCAGATTCTGATCCTTCTAGAAGCTTACTTGATTCTAAGACTCATGTGTTTGATGCTGTTCCTCTTTTATCTTCCTCCCAGGCCTATGAAAGGATGAAAGTATTCAGAGAAAATATAAAGGGAAAGCAGCAATACCTTGCCATGTATTCTAGTATTTTTGGTGGGATAATAACTGATCCAGCAGCTATGGTTATTCCTATGGATGACCATATGGTCCATAGGGGCCACGGTGTCTTTGATACTGCAGCAATAATTGATGGATATTTGTACGAGCTTGATCAACATCTTGATCGCTTCTTAAATTCAGCATCAAGTTCGAAAATAGATCTCCCGTTTGATCGTGAAAGTATTAGAAGAATTCTTATACAAACAGTGAGCGCTTCCAAATGTCGAAATGGATCACTAAGATACTGGCTATCAGCAGGACCTGGTGACTTTAACCTCTCTCCCTCTGGCTGCCACCAATCAGTGCTTTATGCAATTGTAATACATGACATGTCACAGACAACGGACTCAGTTAAGTCCCGAGGAGTTAAAGTAATTACTTCATCTATTCCAATAAAACATCCCAAGTTTGCAATCACCAAAAGTGTGAACTACCTTCCCAATGTGCTTTCAAAGATGGAGGCGGAAGAAGCTGGTGCTTTTGCAGGCATTTGGCTTGACGATGATGGTTTTGTTGCTGAAGGGCCTAATATGAATGTGGCTTTTGTCACTAAAGAGAAGGAACTTATAATGCCTCACTTTGACAAAATTCTAACTGGCTGTACAGCTAAGAGAGTTTTAACTCTTGCAGAGCGTTTGATCGACCAGGGTAAGCTTCGGGGGATAAGAAAGAAAAATATCACTGTCGAAGAAGGGAAGAAAGCAGATGAAATGATGCTTCTTGGTAGCGGCGTTCTAGTTTGCCCAGTAGTGCAGTGGGACGAACATATTTTTGGAGATGGCAAAGAAGGTGACATAACACAGAAACTCTTAAATCTAATTGTTCAAGACATGAAATCATCTCCCTCTGTTCGAACATCTGTTCTATATTAA 1209 0.4078 MAFLRFLPQPLNSLSSPHFLHHHHHHHHHHHHRQRLSFPQQQQQHRLYFPVIKTSALSDSDPSRSLLDSKTHVFDAVPLLSSSQAYERMKVFRENIKGKQQYLAMYSSIFGGIITDPAAMVIPMDDHMVHRGHGVFDTAAIIDGYLYELDQHLDRFLNSASSSKIDLPFDRESIRRILIQTVSASKCRNGSLRYWLSAGPGDFNLSPSGCHQSVLYAIVIHDMSQTTDSVKSRGVKVITSSIPIKHPKFAITKSVNYLPNVLSKMEAEEAGAFAGIWLDDDGFVAEGPNMNVAFVTKEKELIMPHFDKILTGCTAKRVLTLAERLIDQGKLRGIRKKNITVEEGKKADEMMLLGSGVLVCPVVQWDEHIFGDGKEGDITQKLLNLIVQDMKSSPSVRTSVLY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04159 402 CDD PLPDE_IV 126 386 - -
Vifa3g04159 402 Gene3D - 82 220 IPR043131 -
Vifa3g04159 402 PANTHER AMINO-ACID AMINOTRANSFERASE 35 396 - -
Vifa3g04159 402 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 110 390 IPR036038 GO:0003824
Vifa3g04159 402 MobiDBLite consensus disorder prediction 18 36 - -
Vifa3g04159 402 FunFam D-amino-acid transaminase, chloroplastic 81 220 - -
Vifa3g04159 402 Gene3D - 226 402 IPR043132 -
Vifa3g04159 402 MobiDBLite consensus disorder prediction 17 39 - -
Vifa3g04159 402 FunFam D-alanine aminotransferase 226 393 - -
Vifa3g04159 402 Pfam Amino-transferase class IV 134 364 IPR001544 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04159 Vifa-Chr3 1226324176 1226325860 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04159 K18482 - gmx:100794026 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04159 3 1226324176 1226325860 Vifa3g04159 3 1226324176 1226325860 ECH