Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04128 ATGAGCATATGGAAAATCTTGTTCTGTTCTTGTGAGGAAACAGAATCAGTTTTAAGCTTTCTGAAAAATGTTATGATAGTTGTCCTTCTACTATTGCATCATGATCCTCCAACATGTGATGCAATTAGTAATAACCAAACTCATTGTAAACCTTCTTCATGCGGCAAAATCAGTAAAATAAAATACCCATTTCGACTTATGAATGACCCAACAACATGTGGTGATCCGAGCTATGAGTTGTCCTGCGAAAACAACAGAACAGTGTTAACTCTGTTTTCTGGGAAATACTATGTCCAGGAAATCAACTACAAAAACTACACAATTCGATTAGTTGATCCTGGGATTGAAGAGAGTGATTGCTCCTCCACTCCTCAATATTTCTTAACCGGTTCCAATTTCTCAGCTAACTCATTTGAAGAGGAATGGGTTCCATATGGAGTCTATTATCGTTTGGGGTACGAGAACATAATATACTTGAACTGTAGTAAAGCAGTGAAAGATGATCCTTGGTATGTGGATACATCTCCCTGTATCAACCGGGACTCCAATAGCTATTTTTATGCTTTTGCCGACACCCATCGGGAGGATGATGTTTCTAACGTCTTTTATGTCGGGAGGTTAAAAGATTATTGCCGAGTGAAGGTAGTTGCCATCTCGTCATCAAATTTACCAAATCGACCCCTTTCATACCAGCAAATTCATGGAGTTCTAGTCTATGGATTTCAGCTATCGTGGATATCTAGCCCTTGTAGAGATACTTGCGGCGATAAATTATCGTGCTACTTCAATCAAACATCTCGAGATTTGGAATGCTCTAAGCCGTATTATGATTGCCAATATCCATTCGGAGCTTATGTCAATTGCACCCAAATATCGAAGCCGCTCGTATTACTGGAAGATGTATTACTCGGCATTGCTAAAGGAGTACTACAAATATTTGGAATATTAAAAAGCTCTCAATCAAAACCAGAAAACATAGATTTTAAAATTTCCATTGAGTTAGGAAGAGTGACAGGAAGATATATTTTGCCATTTTTCGGTCCAAGATATGAGTACCTTAATGCCAAATAG 1071 0.381 MSIWKILFCSCEETESVLSFLKNVMIVVLLLLHHDPPTCDAISNNQTHCKPSSCGKISKIKYPFRLMNDPTTCGDPSYELSCENNRTVLTLFSGKYYVQEINYKNYTIRLVDPGIEESDCSSTPQYFLTGSNFSANSFEEEWVPYGVYYRLGYENIIYLNCSKAVKDDPWYVDTSPCINRDSNSYFYAFADTHREDDVSNVFYVGRLKDYCRVKVVAISSSNLPNRPLSYQQIHGVLVYGFQLSWISSPCRDTCGDKLSCYFNQTSRDLECSKPYYDCQYPFGAYVNCTQISKPLVLLEDVLLGIAKGVLQIFGILKSSQSKPENIDFKISIELGRVTGRYILPFFGPRYEYLNAK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04128 356 PANTHER OS01G0690200 PROTEIN 24 274 - -
Vifa3g04128 356 Pfam Wall-associated receptor kinase galacturonan-binding 49 112 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04128 Vifa-Chr3 1218416705 1218433168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04128 27 271 Receptor kinase-like Gene Family AT5G38260 25.498 1.49e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04128 - - tpra:123893228 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04128 3 1218416705 1218433168 Vifa3g04128 3 1218416705 1218433168 ECH