Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04115 ATGGAATGCCATAGCCAAAACTCTATGGAAATTCCTTCTTGTTGTTTGAAGGCTAAGGTTTCAGTCCATGAAGCTGAAGGAAAGTGCCATTCTACTGTTGTATCTGGATGGTTCTCACAATCTCAATCTTCCTCTGGTAGAGTTGTTTATTTCAACAATCCAATGTGGCCAGGAGAAGCACATTCAATCAAAGTAGAGAAAATATTGTACAAGGAAAAATCAGAATACCAAGAGGTTTTGGTTTTTGAGTCGTTATCATATGGTAAAGTGCTAGTGCTTGATGGAATTGTTCAGTTGACCGAGAAAGATGAATGTGCTTACCAAGAGATGATAACTCATCTTCCCCTTTGCTCTATTGAGTCCCCAAAAACAGTTTTGGTTGTTGGTGGTGGAGATGGTGGAGTTTTGAGGGAAATATGCCGACATAGTTCTGTGACTCGTGTTGATATTTGCGAGATAGATAAAATGGTTATTGATGTTTCTAAGAAGTATTTTCCGGAGTTAGCGGTTGGATTTGAAGATCCTAGAGTGCACCTGCATGTTGGTGATGCTGTTGAATTTCTTAGATGTACTTCTGAAGGAAAGTATGATGCAATAATTGTTGATTCTTCTGATCCCGTGGGTCCTGGTGAGGAACTCGTAGAGAAGCCATTTTTTATGACAATTGCTAAGGCATTAAGGCCTGGTGGAGTGCTATGTAATATGGCAGAAAGTATGTGGCTTCATACTCATCTTATTCAAGATATGATATCTATCTGTAAACAAACATTTTCTTCGGTATCTTATGCTTGGACAAGTGTTCCAACATATCCGAGTGGTTTGATAGGCTTTATACTATGCTCAAAAGAGGGGTCATCTGTTGATTTTGTGAACCCTGTCAATCCTATTGAAAAAGTTGAAGGTGCTGCTAAACACATAAGAGAACTTAGGTTCTATAACTCAGAGATGCACAAAGCTGCATTTGCCTTGCCAGCATTTTTGAAGAGGGAGGTGGGATTGCTCAGTGCTCTGTGA 1014 0.3964 MECHSQNSMEIPSCCLKAKVSVHEAEGKCHSTVVSGWFSQSQSSSGRVVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESLSYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIESPKTVLVVGGGDGGVLREICRHSSVTRVDICEIDKMVIDVSKKYFPELAVGFEDPRVHLHVGDAVEFLRCTSEGKYDAIIVDSSDPVGPGEELVEKPFFMTIAKALRPGGVLCNMAESMWLHTHLIQDMISICKQTFSSVSYAWTSVPTYPSGLIGFILCSKEGSSVDFVNPVNPIEKVEGAAKHIRELRFYNSEMHKAAFALPAFLKREVGLLSAL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04115 337 Gene3D Vaccinia Virus protein VP39 99 333 IPR029063 -
Vifa3g04115 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 330 IPR029063 -
Vifa3g04115 337 CDD AdoMet_MTases 147 232 - -
Vifa3g04115 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 21 331 IPR001045 GO:0003824
Vifa3g04115 337 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 125 138 IPR030373 -
Vifa3g04115 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 35 282 IPR030374 -
Vifa3g04115 337 NCBIfam spermidine synthase 58 326 IPR001045 GO:0003824
Vifa3g04115 337 Pfam Spermidine synthase tetramerisation domain 54 101 IPR035246 -
Vifa3g04115 337 FunFam Spermidine synthase 1 28 98 - -
Vifa3g04115 337 PIRSF Spermidine_synth 24 336 IPR030668 GO:0006595
Vifa3g04115 337 Hamap Polyamine aminopropyltransferase [speE]. 36 332 IPR001045 GO:0003824
Vifa3g04115 337 FunFam Spermidine synthase 1 99 335 - -
Vifa3g04115 337 Pfam Spermine/spermidine synthase domain 104 289 - -
Vifa3g04115 337 Gene3D Spermidine synthase, tetramerisation domain 28 98 IPR037163 -
Vifa3g04115 337 NCBIfam fused MFS/spermidine synthase 105 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04115 Vifa-Chr3 1213951133 1213952915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04115 K00797 - gmx:100816988 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04115 3 1213951133 1213952915 Vifa3g04115 3 1213951133 1213952915 ECH