Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04112 ATGGCAACACTTCAAACTTCTCTTCTCTTCAAACCCCCCTTCCCATTCCTCATTCCCAACCACTCCACTCGTAAACCTCACCGCCACTTCTCCTTCAACCCCACGCGCTTCCGCACGCGCCTCCCTTCCCCTCTCCTCTGCACACTTCAACCCGACGCAACTACTCCCTACTCCGATCCTAACCCTATCCCTAGCCCTAACCCAACCCTACCCGAACCAAAACCTGATTCCGCTGACGTCGAGCTTATAAATTCAACGGAAAACGATTTGGATTCTAATTCAAACGAATCGCGATTCGAGAGTAGTGATGGCGAGACTTTCGAGGGTTTGGAAAGTGAAAAGAAGGTTTCGAGATTGCCGATACTGGCGTTCTTGATTGGAGTTTGGGTGAGAGCTAGAGAACGTGTTGAGAGGGCGTTTTCGGAGTTTTTTGATTGGTGGCCATTTTGGCGGCAGGAGAAATGGTTGGCGAAGTTGATTTCAGAAGCTGATTTGAATAGGCAGGATGCTGATAAGCAGACTGCTCTGTTTGTTGAACTCAATAAGCACAGTCCCGAGTCTGTGATAAAGAGATTTGAAGAAAGGGATCGAGCTGTGGACAGCAGAGGAGTCGCAGAATATCTTCGAGCACTAGTGGTCACTAATGCTATTGCAGAATATCTTCCTGATGAGGAATCTGGAAAACCTTCTGGTCTTCCTACCTTGCTGCAAGAGTTGAAACAACGGGCATCAGGTAACACAGATGAGACTTTTCTTAACCCTGGAATATCTGAGAAGCAGCCGTTGCATGTGGTTATGGTTGATCAAAAGGTATCAAACAAATCACGTTTTGCACAAGAGATTATCTCAGCTATTTTGTTTACTGTAGCTGTTGGATTGGTCTGGTTTATCGGTGCTACTGCACTTCAAAAATACATTGGAAGCTTGGGTGGGATTGGTTCTTCAGGTGTTGGTTCAAGTTCTTCCTATACCCCCAAGGAGTTAAACAAGGAAGTAATGCCAGAAAAGAATGTAAAAACTTTTAAGGATGTGAAGGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCAGCTAAATTTACACGCCTTGGAGGAAAGTTGCCAAAGGGGATTCTTCTGACAGGGGCACCTGGAACTGGAAAAACTCTGCTAGCCAAGGCTATTGCTGGAGAAGCAGGGGTTCCATTTTTCTACCGTGCAGGGTCAGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTGAGGTCCTTATTTCAAGCAGCCAAAAAGAAGGCTCCTTGCATTATTTTCATTGATGAAATTGATGCTGTTGGATCAACCAGGAAACAATGGGAGGGCCACACCAAGAAAACATTGCACCAACTACTCGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCTGCAACAAACCTACCTGATATTCTTGATCCAGCTTTAACGAGGCCTGGTAGATTTGATCGACATATTGTTGTACCGAATCCAGATGTACGTGGTCGGCAAGAAATATTGGAACTCTACCTGCAAGATAAACCTACAGCCGAGAATGTTGATATTAAAGCAATAGCTCGTGGTACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTGAACATTGCTGCCATTAAAGCTGCGGTTGAAGGTGCAGAGAAATTAACAGCTTCACAGTTGGAGTTTGCAAAAGACAGAATAATTATGGGTACAGAGCGGAAAACAATGTTCATATCCGACGAGTCAAAAAAGCTGACTGCTTATCATGAGAGCGGCCATGCAATTGTTGCCCTTAACACCGACGGTGCACATCCAATTCACAAGGCAACGATAATGCCCCGTGGATCTGCTTTAGGAATGGTTACTCAGCTTCCCTCAAATGATGAAACGTCAATAAGTAAGAAGCAGTTGTTAGCTCGTCTTGATGTTTGTATGGGAGGAAGAGTTGCAGAAGAGCTTATCTTTGGTCGTGATAATGTCACAACTGGAGCAAGTAGCGATCTTCAATCTGCTACCGAGCTTGCCCAATACATGGTTTCAAGTTGTGGGATGAGTGATACAATCGGACCAATTCATATAAAGGAGAGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGGTTGTTAAACTCCTTAGAGATGCATATGATCGTGTGAAAGCTCTTCTGAATAAGCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTGCGAGACACTTAATTCAGAAGAAATCAGACGATTACTTCTCCCATATCGAGAAGGAAGACTGCCAGAACAACAGGAACAAGAAGAAGCAGAAGGAGATCTTGTATTGGTCTAA 2367 0.4444 MATLQTSLLFKPPFPFLIPNHSTRKPHRHFSFNPTRFRTRLPSPLLCTLQPDATTPYSDPNPIPSPNPTLPEPKPDSADVELINSTENDLDSNSNESRFESSDGETFEGLESEKKVSRLPILAFLIGVWVRARERVERAFSEFFDWWPFWRQEKWLAKLISEADLNRQDADKQTALFVELNKHSPESVIKRFEERDRAVDSRGVAEYLRALVVTNAIAEYLPDEESGKPSGLPTLLQELKQRASGNTDETFLNPGISEKQPLHVVMVDQKVSNKSRFAQEIISAILFTVAVGLVWFIGATALQKYIGSLGGIGSSGVGSSSSYTPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPTAENVDIKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTASQLEFAKDRIIMGTERKTMFISDESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSNDETSISKKQLLARLDVCMGGRVAEELIFGRDNVTTGASSDLQSATELAQYMVSSCGMSDTIGPIHIKERPSSEMQSRIDAEVVKLLRDAYDRVKALLNKHEKALHVLANALLECETLNSEEIRRLLLPYREGRLPEQQEQEEAEGDLVLV 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04112 788 MobiDBLite consensus disorder prediction 57 73 - -
Vifa3g04112 788 Coils Coil 721 741 - -
Vifa3g04112 788 FunFam ATP-dependent zinc metalloprotease FTSH 11 325 507 - -
Vifa3g04112 788 Pfam AAA+ lid domain 529 571 IPR041569 -
Vifa3g04112 788 MobiDBLite consensus disorder prediction 93 107 - -
Vifa3g04112 788 SMART AAA_5 374 509 IPR003593 GO:0016887
Vifa3g04112 788 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 35 781 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vifa3g04112 788 FunFam ATP-dependent zinc metalloprotease FtsH 582 770 - -
Vifa3g04112 788 PANTHER METALLOPROTEASE M41 FTSH 98 775 - -
Vifa3g04112 788 SUPERFAMILY FtsH protease domain-like 589 766 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vifa3g04112 788 NCBIfam ATP-dependent zinc metalloprotease FtsH 264 760 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vifa3g04112 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 604 IPR027417 -
Vifa3g04112 788 Gene3D - 318 507 IPR027417 -
Vifa3g04112 788 Pfam Peptidase family M41 588 763 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vifa3g04112 788 MobiDBLite consensus disorder prediction 48 107 - -
Vifa3g04112 788 CDD RecA-like_FtsH 340 505 - -
Vifa3g04112 788 Gene3D - 508 581 - -
Vifa3g04112 788 FunFam ATP-dependent zinc metalloprotease FtsH 508 582 - -
Vifa3g04112 788 Pfam ATPase family associated with various cellular activities (AAA) 378 506 IPR003959 GO:0005524|GO:0016887
Vifa3g04112 788 ProSitePatterns AAA-protein family signature. 477 495 IPR003960 GO:0005524|GO:0016887
Vifa3g04112 788 Gene3D Peptidase M41 582 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04112 Vifa-Chr3 1213334377 1213348200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04112 2 766 Miscellaneous Gene Families AT5G53170 73.048 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04112 K08955 - gmx:100794322 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04112 3 1213334377 1213348200 Vifa3g04112 3 1213334377 1213348200 ECH