Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04090 ATGCATATTCAAACATGTCACTCCATCAAAACACTTCCATTAACATGGAACACTCCAAAAACCATGAACCAAAGAACACATTGCAACCTACTTCCACCACCAAAATCCACCATCTCCGCCGCATCACCGCCGCTGAAATTGTCCAAAACCCATTCACTGCCACCGGAAAAACTCGAAGTTTTCAAGTCACTAGAAGCCTGGGCTTCTGAGTCTGTACTACCACTCTTAAAGCCCGTGGAACAATGCTGGCAGCCACAGAGTTTTCTCCCTGATCCTTCATTACCGTTCGATGAATTCACCGAGAAGGTGAAAGCTCTTCGGGATCGAACCAAAGAGCTTCCGGATGAGTATTTTGTTGTGCTGGTTGGTGATATGGTGACGGAAGACGCGCTTCCGACTTATCAGAGTATGATTAATGGGCTTGATGGGGTGGGTGATGAGAGTGGCGCGAGTCCAAGCCCGTGGGCTGTGTGGACACGGGCTTGGACTGCGGAAGAGAATAGGCATGGGGATTTGCTTAGGACTTATTTGTATCTTTCTGGGAGGGTTGATATGGAGAAGATTGAGAAAACTGTTCAGTATCTTATTGGAGCTGGCATGGACCCAGGAACAGAAAACAACCCATATTTGGGATTTGTATACACATCATTCCAAGAGCGAGCCACATTTGTATCACACGGAAACACGGCTCGCTTAGCGAAAGAAGGTGGTGATCCAGTACTTGCACGCATATGCGGTACTATTGCAGCAGACGAGAAGCGTCACGAGAATGCCTACTCAAAAATCGTTGAGAAGCTTCTCGAAGTTGACCCCTCAGGAGCAATGGTAGCCATTGGTGATATGATGGAGAAAAAGATCACAATGCCTGCACATCTTATGTATGACGGACAAGACCCTAAGCTATTCGAGCATTTTGCAGCCGTGGCACAACGTACAGGCGTCTACACGGCTAATGATTATGCTGATATCTTGGAGTTTTTAGTCGAACGGTGGAGGTTGGAGAAGTTGGAAGGATTAACGAGCGAGGGTAAAAAGGCGCAAGATTATGTTTGTGGATTAGCGCCGAGGATCAGGAGGCTGCAAGAGCGTGCTGATGCGCGGGCACGCAAGATGAAGCCACAAGGCGTCAAGTTTAGTTGGGTTTTTAATAATGAGGTAATTTTGTGA 1167 0.473 MHIQTCHSIKTLPLTWNTPKTMNQRTHCNLLPPPKSTISAASPPLKLSKTHSLPPEKLEVFKSLEAWASESVLPLLKPVEQCWQPQSFLPDPSLPFDEFTEKVKALRDRTKELPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDESGASPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEKIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSKIVEKLLEVDPSGAMVAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLVERWRLEKLEGLTSEGKKAQDYVCGLAPRIRRLQERADARARKMKPQGVKFSWVFNNEVIL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04090 388 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 44 386 IPR005067 GO:0006631|GO:0045300
Vifa3g04090 388 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 41 388 - -
Vifa3g04090 388 Pfam Fatty acid desaturase 56 382 IPR005067 GO:0006631|GO:0045300
Vifa3g04090 388 PIRSF Dlt9_acylACP_des 13 388 IPR005067 GO:0006631|GO:0045300
Vifa3g04090 388 Gene3D Ribonucleotide Reductase, subunit A 43 388 IPR012348 GO:0016491
Vifa3g04090 388 SUPERFAMILY Ferritin-like 46 387 IPR009078 -
Vifa3g04090 388 CDD Acyl_ACP_Desat 56 364 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04090 Vifa-Chr3 1205328247 1205329992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04090 32 386 Acyl Lipid Metabolism Gene Families AT1G43800 74.792 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04090 K03921 - gmx:100037478 643.269