Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04088 ATGGTGACAGGAGAAGATTTATACAACGTGATGTGTGCAATGGTACCTCTATATTTCGCAATGCTAGTTGCTTATGGTTCAGTAAAGTGTTGCAAAATGTTCACACCAGAGCAATGTTCAGGCATAAACAGATTTGTGGCAGTTTTTGCTGTTCCAGTTTTATCTTTTCACTTCATTTCTCTCAACAATCCTTATCAAATGGACACTAAATTTATTTTAGCAGATACAATTGCTAAGCTATTTGTTCTCTTTATTCTTTCCATTTGGGCTACTTTCTTTGCTAATGGCTCTTTGGATTGGCTCATCACTTTGTTCTCTGTTGCCACCTTGCCTAATACACTTGTTATGGGGATTCCTCTACTTCAAGCTATGTATGGTGATTTTACGGAAAGTCTCATGGTGCAACTTGTTGTTCTTCAATGCATCATATGGTATACCGTGTTACTATTCCTACTAGAATACAGAGCAGCAAAACACTTAATCAAAACCGAGTTCCCGGGAAACAAAGCCGCCTCCATAACAAAATTCGAACTGGACGGGGACGTAATTTCCCTCTACGGCCAATCCGCGCCGCTCCAAACCCTATCAGAAACCGATGAAACCGGCCGCATAAAAGTCCGAATCCGTAGATCCACTTCCTCAGCACCAGGAGAATCAACCTCATCAATAACCAACGGCATTACTCCAACACGCCTCTCCAATCTCTCCAATGCCGACATCTTCTCCATCAACACGCCGCTGAATTTTCTCGATCATGCGAATGCGAGCCCCCGCCTCTCCGGTTACGCTTCTACGGATGCTTATTCGTTGCAGCCGACTCCGCGGGCGTCGAATGTTAATGAGTCGGAGATATGTGGTACGCCGGTGGTGGGGAGGTCGCCGGTGGGTGGTGGGAGGGGGTTGAGGGGGAATTCGCCGGTGGTGGAGGGGGGAAGGGTGGTTTGGGAATCGTCTGAGAAGTGGCGGGGTGAAGAGAGACAAGGATGCAAGGACATTACTATGTCAGATAAGGAAATTAGCTTCAGAGATAGCCTCAAAGTCTCAATGGCAGGGGAAGCTATGGACCCAAAAGACCAAATTTCCAGTAACCAGAAAATGCCATATGCCTTTGTAATGTTGAGGCTTATACTTATTGTTGTTGGACGAAAACTTTCTCGAAATCCTAATACATATTCTAGCCTATTAGGACTTCTCTGGTCTCTAATCGCCTTCAAATGGAATATAGAAATGCCGAGTTTGATCAAATCATCTATCAAAATTATATCTGATGCAGGTCTTGGGATGGCAATGTTTAGCTTAGGGCTTTTCATGGCTCTTCAGCCTCGAATCATTGCGTGTGGTACAAAAAAAGCAACCATGGGAATGGCCATTAGATTCCTATTTGGACCTCTTGTAATGTCATTATCTTCCATTGCCATTGGATTGAGAGGAAAAAAATTGCATACTGCTATTGTACAGGGGATTGTACCATTTGTATTTGCAAGGGAATATGGGCTTCATCCTGATATTTTGAGCACAGGGGCAGGGAAGCACTCCGCTCCCGCGACCCTCTCCAAGTCAAAAAGCAGCCGTTATCTCAAACCGAGAGGAGAACTGCTACGATGTAGTGGTCGACCACCACTCCACACCACTCTCCTTGGATAG 1644 0.4501 MVTGEDLYNVMCAMVPLYFAMLVAYGSVKCCKMFTPEQCSGINRFVAVFAVPVLSFHFISLNNPYQMDTKFILADTIAKLFVLFILSIWATFFANGSLDWLITLFSVATLPNTLVMGIPLLQAMYGDFTESLMVQLVVLQCIIWYTVLLFLLEYRAAKHLIKTEFPGNKAASITKFELDGDVISLYGQSAPLQTLSETDETGRIKVRIRRSTSSAPGESTSSITNGITPTRLSNLSNADIFSINTPLNFLDHANASPRLSGYASTDAYSLQPTPRASNVNESEICGTPVVGRSPVGGGRGLRGNSPVVEGGRVVWESSEKWRGEERQGCKDITMSDKEISFRDSLKVSMAGEAMDPKDQISSNQKMPYAFVMLRLILIVVGRKLSRNPNTYSSLLGLLWSLIAFKWNIEMPSLIKSSIKIISDAGLGMAMFSLGLFMALQPRIIACGTKKATMGMAIRFLFGPLVMSLSSIAIGLRGKKLHTAIVQGIVPFVFAREYGLHPDILSTGAGKHSAPATLSKSKSSRYLKPRGELLRCSGRPPLHTTLLG 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04088 547 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 507 - -
Vifa3g04088 547 NCBIfam auxin efflux carrier 1 507 IPR014024 -
Vifa3g04088 547 Pfam Membrane transport protein 10 507 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04088 Vifa-Chr3 1204394400 1204402653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04088 1 506 Organic Solute Cotransporters AT1G77110 61.525 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04088 K13947 - gmx:100800139 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04088 3 1204394400 1204402653 Vifa3g04088 3 1204394400 1204402653 ECH