Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04080 ATGAATGCTTCTTCCTCTTCCTTGACTCACGCTGAATTCGATTACTTGTTCAAGCTTCTCATGATTGGTGATTCTGGAGTTGGAAAAAGCACGCTGCTTCTCAGATTCACCTCTGATACTTTCGAGGATCTTTCTCCCACTATCGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTGGTTCATATTATAGAGGCGCACAAGGAATAATTATGGTATATGATGTAACGCGGCGGGACACCTTTACAAATCTATCTGACATATGGGCTAAAGAAATTGACCTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTAGGGAACAAAGTTGACAAGGAAAGTGAAAGGGTTGTTACCAAAAAGGAAGCAGTGGACTTTGCAAGGCAATATGGGTGCCTTTATACTGAATGCAGTGCAAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGCTCTTGGCCGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCCCAAGAGTCTGATGCATCTACTAGTAGCTGTTGCTCATGGTGA 627 0.4115 MNASSSSLTHAEFDYLFKLLMIGDSGVGKSTLLLRFTSDTFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKLLAEGSSGVKKNIFKQKPQESDASTSSCCSW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04080 208 ProSiteProfiles small GTPase Rab1 family profile. 12 208 - -
Vifa3g04080 208 PANTHER RAS-RELATED PROTEIN RAB 16 187 - -
Vifa3g04080 208 Pfam Ras family 18 178 IPR001806 GO:0003924|GO:0005525
Vifa3g04080 208 CDD Rab18 17 178 - -
Vifa3g04080 208 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Vifa3g04080 208 SMART arf_sub_2 1 182 - -
Vifa3g04080 208 ProSiteProfiles small GTPase Ras family profile. 6 208 IPR001806 GO:0003924|GO:0005525
Vifa3g04080 208 Gene3D - 10 206 IPR027417 -
Vifa3g04080 208 ProSiteProfiles small GTPase Rho family profile. 10 180 - -
Vifa3g04080 208 NCBIfam small GTP-binding protein domain 15 173 IPR005225 GO:0005525
Vifa3g04080 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 180 IPR027417 -
Vifa3g04080 208 PRINTS Transforming protein P21 ras signature 57 79 - -
Vifa3g04080 208 PRINTS Transforming protein P21 ras signature 17 38 - -
Vifa3g04080 208 PRINTS Transforming protein P21 ras signature 121 134 - -
Vifa3g04080 208 PRINTS Transforming protein P21 ras signature 39 55 - -
Vifa3g04080 208 PRINTS Transforming protein P21 ras signature 156 178 - -
Vifa3g04080 208 SMART rab_sub_5 17 181 - -
Vifa3g04080 208 FunFam Ras-related protein RABC1 10 206 - -
Vifa3g04080 208 SMART ras_sub_4 14 181 - -
Vifa3g04080 208 SMART ran_sub_2 22 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04080 Vifa-Chr3 1201223987 1201226857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04080 18 171 EF-hand Containing Proteins AT5G27540 22.785 5.76e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04080 K07910 - gmx:100794330 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04080 3 1201223987 1201226857 Vifa3g04080 3 1201223987 1201226857 ECH