Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04079 ATGGTGAAGGAAACAGAGTATTATGATATCCTCGGAGTCTCTCCTTCGGCTTCCGATGATCTAATTCGCAAGGCTTATTATCAAAAGGCGAAGCAAGTTCATCCTGATAGAAACCAAAACGATCCTAACGCTGCACACAAGTTCCAGATTTTGGGCGAAGCTTATCAGGTTTTGAGTGATCCGGTACAGAGGAAGGGGTATGATCAAAATGGAAAGCATTCTGTATCTAGAGAAACGATGCTGGACCCCATGGCTGTCTTTGCCCTGCTCTTTGGAAGTGAATTGTTTGAGGACTACGTTGGGCATCTAGCTGTTGCATCGATGGCTTCTTCTGATCTAGCGGATGAAAGTGAGGATTTGCAGGAAAAGCTAAAGGCTGTCCAGAAAGAAAGGGAAGAAAAGCTAGCAAGATTTTTGAAAGATTGTCTCAACCAATATGTCCGTGGTGACCAAAAAGGTTTCTTGCAGCGCGCTGAATCCGAAGCAAAACGGCTTTCTCATGCAGCTTTTGGAGTTGACATGTTACATACCATAGGCTATATATACTCGAGACAAGCAGCTCAAGAACTAGGGAAAAAGGCCCTTTATCTTGGAGTGCCATTTCTGACTGAATGGGTTCGCAATAAAGGACACTTCTGGAAATCACAGTTAACAGCTGCTAAAGGTGCTTTTCAGTTGCTCCAACTTCAAGAAGAACTCAGCAGGCAATTTAGAACTGGTGGTAGTTGCCCTGAAAATGTTGACTCCCATATTCGTCTTAATAAGGATACTTTGTTGAATTCGCTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACCCTTGCACACGTGTGTCAAATGGTGCTAAAGGAAAATAATGTTCGGAAAGAGGAACTTAAAGTTCGAGCCATCGCTCTTAAAATTCTTGGGAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACACTAAAGAAGAAACATGCTGTTGATTCTGATGACGAAGGAAGCAGCTCTGATTCATCAGACGATGAATCATCGCATAGAGCACTTACCTATCGAACTCCCTTTTTCACTCAGGGTATTGGTAGGCTCTTCAAATGTCTTTGTAATCCAGCATTTGATGTGGACGATGAAGAGATAGTTTACAAAAGCAAATAA 1137 0.4204 MVKETEYYDILGVSPSASDDLIRKAYYQKAKQVHPDRNQNDPNAAHKFQILGEAYQVLSDPVQRKGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMASSDLADESEDLQEKLKAVQKEREEKLARFLKDCLNQYVRGDQKGFLQRAESEAKRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLTEWVRNKGHFWKSQLTAAKGAFQLLQLQEELSRQFRTGGSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRKEELKVRAIALKILGKIFQEKNAKGETLKKKHAVDSDDEGSSSDSSDDESSHRALTYRTPFFTQGIGRLFKCLCNPAFDVDDEEIVYKSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04079 378 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vifa3g04079 378 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vifa3g04079 378 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vifa3g04079 378 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vifa3g04079 378 CDD DnaJ 6 60 IPR001623 -
Vifa3g04079 378 Gene3D DnaJ domain 1 85 IPR036869 -
Vifa3g04079 378 SMART dnaj_3 5 63 IPR001623 -
Vifa3g04079 378 Coils Coil 110 137 - -
Vifa3g04079 378 MobiDBLite consensus disorder prediction 316 339 - -
Vifa3g04079 378 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vifa3g04079 378 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vifa3g04079 378 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vifa3g04079 378 Pfam X-domain of DnaJ-containing 128 314 IPR026894 -
Vifa3g04079 378 Pfam DnaJ domain 6 68 IPR001623 -
Vifa3g04079 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04079 Vifa-Chr3 1201219231 1201223117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04079 7 81 Miscellaneous Gene Families AT1G16680 40.260 3.94e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04079 - - gmx:100793811 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04079 3 1201219231 1201223117 Vifa3g04079 3 1201219231 1201223117 ECH