Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa3g04042 | ATGACGGATAAGAAGAGATGGTTATGGAAAAGGAAGTCTTCCGAGAAGAGTTCGGGCGAAGCTGAGAGTTCGGGATCTGTTTCCAGTGAGAGGTATTCTGATGAACAGGAGGTATCAAAGGAATCTTCTAATGGAAGCAATCATTCACCTGATGTTACCTCAAAAGCTCTGACCTGTGCTGACGACGACGTTGATGATTGTTCAGTTATCAATGAACAACTTCCTGATGGAGTTGCATCAACACATCTACCTTCTTCTACGTGCGTCGTAAATGGCGGTTCATTAGAGAGGAATGAGAATGGAGGAAATGAAAATATATCAAATGGAAAAGAAGATGATTTAAGTGATGCGTCGAGGGATATATCTGAGAAGCTATCTGCTGCTCTTGTTAATGTCAATGTCAAAGAAGACTTGGTTAAGCAGCATGCAAAAGTTGCCGAAGAAGCCATAGCAGGATGGGAAAAAGCCGAAAATGAAGTATCAGTTTTAAAGAAACAACTCGAGACAGTTACACTGAGGAATTCGGCTCTTGAAGATAGAGTCACCCATCTAGATGGAGCACTTAAGGAGTGTGTTAGGCAGCTAAGACAAACAAGAGAAGAGCACGAAGCAAATATTCAAGATGCCGTTGCCGAAAAGACTCACGAATTGGAATCGGACAAAATCAAACTCGAGAGCAAGCTCGTTGAGATCCAGAAAAAATTAGACGCATCAAATGCCAAATCTTCTATTGACCGTGATATGCGTCAAAAAGTTGAGTGGTTCGAGAAAGAGAATATGGCTCTCAGGCATGAAATCCTAGTTCAATCGGAAGAGCTGAAAATCAGATCAATTGAGAGAGATTTAAGCACTCAAGCCGCCGAGACAGCTAGTAAGCAACATTTAGAAAGCATCAAGAAAGTAGCTAAGCTTGAGGCCGAGTGTCGGAAACTGAAGAGCATGGCTTCTAAAGCACTGTTGGTTACTGATCATAAAGCTATTGCTTCATCCTCATTTTGTGTTGAATCTCTCACGGATAGTCAATCGGATAGTGTGGAACGACTTGCTGCATTGGATTGTGATACTTACAAGATGAATGGTTCGGAACTAAATAGGTGTGAGCCAAGTGTTTCCGACTCATGGGCGTCCGCATTAATTGCCGAGCTTGATCAGTTCAAGAATGAAAAATGCTGCGGACAAGCTCCATCTGGTTCTGTTAAAATAGATCTGATGGACGACTTTCTTGAAATGGAACGACTTGTTGCATTGCCCGAGACTAAGAACGAAAGCTTTGTTGAGGAGTCAGTTGTTTTTGACAATCAACGCATTGACAAAGAAAGCACACTCAGAGCCGAGTTTGACATCATGAATCAGCAAATGGATGAACTAAAAGGGAAGTTAGAAAAGGTGGAAGCAGATAAGGCTGGACTACAGATAGCTTTGATGGAAAGTAAAGAGTTTATCGAGGAGTCACAACTTCAGTTGAGGGAGGTGGAACAGAAACTGGAGGAGCTTCAAATAGAGCTAGAGAATTCCTACAAATCAAATCAAAAGATAGAAAATCTCTTATTAAGCATGGAGGCAGATAGTCGAACACTATCATCCAAAGTCAACTCATTAGAAGCCGAGGTTGATAATGAAAGGGCTGTGTCACATGAAATTGTGATGAAGTGTAAGGATCTGGAAGAAGAGTTAGAAAGAAAATCTTCAATGCTTAGCTCATTAGAAGTTGAGGTTGAAAAGGAGAGGAACACGTCGCATGTATTGGAAAAAGAGTTAGAAAGCAAATCTTCCATGCTTGGCTTATTAGAAGTTGAGGTCGAAAAGGAGAGAAACACGTCGCATGCAATTGCAATAAAATGTGAGGGCCTAGAGGAAGAGCTAGAAGGAAAATGTGCAAAGGTTGAGTTGTTAGAAGCAGAGGTTGTCAAGGAAAGGGCCGTGTCGAATGAAGTTGCTGCCAAGTGTAAGAACTTGGAGGAAGAGCTAGAAATCAAATCTGCAAAGCTTGAGTTATTAGAAGCAGAGGTCGAAAAGGAGAAAGCCATGTCTGAAGAATTTGCAATGAAGTGTAGCGAATTGGAGGAAGAGATACTCAGGCCAACATCTAGCTTGTATGGAGAAAAGAAAATCAAGCAGGAGGACCTAGCCCTCGCAGCCGGAAAGCTCGCAGAATGCCAGAAAACAATAGCATCTTTAGGGAATCAGCTAAAATCTCTTGCCACACTTGAGGATTTCCTTATCGACACTGCTGGAATTCCTTCAAGTCCATCATCACTCATTGCTCATGCTAGTGGCGAGATGTGGAAGATGCATTCAAATTACACATTTTCACCTAAAAGAGAAACCATTTCTTCCAGGTTGCCTGATGCTAGCTCTAGTCTATCCCTAAACAGAAGTGAGGAAAGCTCGCCACTTACGTCGTCTCCTTCAGCTTCATCAGTAGCCTTGCCAAATCACGCCAGTTCTGAGAGGAGTCGAAATGGTTTCGCAAAATTTTTCTCGCGAACCAAGAATGGGATTAGGCTAGAAATTTAG | 2517 | 0.4215 | MTDKKRWLWKRKSSEKSSGEAESSGSVSSERYSDEQEVSKESSNGSNHSPDVTSKALTCADDDVDDCSVINEQLPDGVASTHLPSSTCVVNGGSLERNENGGNENISNGKEDDLSDASRDISEKLSAALVNVNVKEDLVKQHAKVAEEAIAGWEKAENEVSVLKKQLETVTLRNSALEDRVTHLDGALKECVRQLRQTREEHEANIQDAVAEKTHELESDKIKLESKLVEIQKKLDASNAKSSIDRDMRQKVEWFEKENMALRHEILVQSEELKIRSIERDLSTQAAETASKQHLESIKKVAKLEAECRKLKSMASKALLVTDHKAIASSSFCVESLTDSQSDSVERLAALDCDTYKMNGSELNRCEPSVSDSWASALIAELDQFKNEKCCGQAPSGSVKIDLMDDFLEMERLVALPETKNESFVEESVVFDNQRIDKESTLRAEFDIMNQQMDELKGKLEKVEADKAGLQIALMESKEFIEESQLQLREVEQKLEELQIELENSYKSNQKIENLLLSMEADSRTLSSKVNSLEAEVDNERAVSHEIVMKCKDLEEELERKSSMLSSLEVEVEKERNTSHVLEKELESKSSMLGLLEVEVEKERNTSHAIAIKCEGLEEELEGKCAKVELLEAEVVKERAVSNEVAAKCKNLEEELEIKSAKLELLEAEVEKEKAMSEEFAMKCSELEEEILRPTSSLYGEKKIKQEDLALAAGKLAECQKTIASLGNQLKSLATLEDFLIDTAGIPSSPSSLIAHASGEMWKMHSNYTFSPKRETISSRLPDASSSLSLNRSEESSPLTSSPSASSVALPNHASSERSRNGFAKFFSRTKNGIRLEI | 838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 39 | 54 | - | - | |
| Vifa3g04042 | 838 | Pfam | Filament-like plant protein, long coiled-coil | 247 | 319 | IPR008587 | - | |
| Vifa3g04042 | 838 | Pfam | Filament-like plant protein, long coiled-coil | 368 | 425 | IPR008587 | - | |
| Vifa3g04042 | 838 | Pfam | Filament-like plant protein, long coiled-coil | 135 | 241 | IPR008587 | - | |
| Vifa3g04042 | 838 | Pfam | Filament-like plant protein, long coiled-coil | 657 | 735 | IPR008587 | - | |
| Vifa3g04042 | 838 | Coils | Coil | 551 | 585 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 214 | 241 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 642 | 690 | - | - | |
| Vifa3g04042 | 838 | SUPERFAMILY | Tropomyosin | 442 | 633 | - | - | |
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 90 | 108 | - | - | |
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 90 | 118 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 192 | 212 | - | - | |
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 781 | 816 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 614 | 634 | - | - | |
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 446 | 536 | - | - | |
| Vifa3g04042 | 838 | PANTHER | FILAMENT-LIKE PLANT PROTEIN 4 | 3 | 562 | - | - | |
| Vifa3g04042 | 838 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Vifa3g04042 | 838 | Coils | Coil | 153 | 180 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa3g04042 | Vifa-Chr3 | 1192091395 | 1192094517 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa3g04042 | - | - | mtr:25482469 | 1144.03 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa3g04042 | 3 | 1192091395 | 1192094517 | Vifa3g04042 | 3 | 1192091395 | 1192094517 | ECH |