Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04035 ATGATATTCATGGCACAAATTCAGTTTCCTAGTCACATGTCACTTGCATCTATGGTTATGGTTATTTTGTTTACAACTACTTCTCCAATATTTGCTACGAAGGATTGCAATTTTCCTGCCATCTTCAACTTTGGTGCTTCGAACTCGGATACGGGTGGTATGGCGGCCGCCTTTGGACCACCCGGATTACCATATGGAATCACTTATTTTAATAGATCAGCAGGAAGGTATTCTGATGGCCGAATCATTCTTGATTTTATAGCACAGAACTTTGGACTTCCATATATCAGTCCCTATCTTGATTCTCTAGGGTCAAACTTCACACATGGCGCAAACTTTGCAACATTTGCATCAACAATCGATATTCCTACTAGTATTATGCCTCTGGGAAAACTTAGTCCCTTTTGCTTGGCAGTTCAATGCACTCAGTTCAAATATTTTATACTCAATACAAAACTCATTAGAGATCAAGGAGGTGTATTTTCAACGTTGGTCCCTAAAGAAGATTATTTTTCAAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGTTTTCTTGGTAATACAAGCATACAGCAAGTCAATGCTACTATACCTAATGTAGTAGACAAATTCATAGAGAATATCAAAAACATATACAACTTAGGGGCTAGGTCATTTTGGATACACAACACAGGACCAATTGGATGTCTTCCCATAATTTTAGCTAGTTTTCCGACCTCTATAAAAGATGGATATGGCTGTGCAAAGATATACAATGAAGTGTCTCAATATTTCAATTTAAAGTTGAAGGAAGCTTTAGCTCAACTCCGTTCTGATCTCCCTCTGGCTGCAATCACATATGTAGATACTTACTCTCCTAAGTATTCTCTTTTTCAAAATCCAAAAAAATATGGATTTGAGTTTCCACTTATGGCATGTTGTGGTAATGGAGGAAAGTACAACTATAATAGTCGTGGTAACTGTGGACAAGTCGCAAGTGGTACACAAAAAGTTGTAGGTTCATGTTTAAGCCCAAATACTAGAATCGTATGGGATGGTATCCATTACACAGAGGCAGCTAACAAAATTGTCTTTGATCAAATCTCTACGGGAGCTTTTACAGATCCTCCAATTCCCCTTAATATGACATGTCAAAAAAATTCCACGTAA 1164 0.3729 MIFMAQIQFPSHMSLASMVMVILFTTTSPIFATKDCNFPAIFNFGASNSDTGGMAAAFGPPGLPYGITYFNRSAGRYSDGRIILDFIAQNFGLPYISPYLDSLGSNFTHGANFATFASTIDIPTSIMPLGKLSPFCLAVQCTQFKYFILNTKLIRDQGGVFSTLVPKEDYFSKALYTFDIGQNDLTAGFLGNTSIQQVNATIPNVVDKFIENIKNIYNLGARSFWIHNTGPIGCLPIILASFPTSIKDGYGCAKIYNEVSQYFNLKLKEALAQLRSDLPLAAITYVDTYSPKYSLFQNPKKYGFEFPLMACCGNGGKYNYNSRGNCGQVASGTQKVVGSCLSPNTRIVWDGIHYTEAANKIVFDQISTGAFTDPPIPLNMTCQKNST 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04035 387 Pfam GDSL-like Lipase/Acylhydrolase 41 366 IPR001087 GO:0016788
Vifa3g04035 387 CDD SGNH_plant_lipase_like 39 369 IPR035669 -
Vifa3g04035 387 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 22 375 - -
Vifa3g04035 387 Gene3D SGNH hydrolase 30 369 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04035 Vifa-Chr3 1190023867 1190025744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04035 39 386 Acyl Lipid Metabolism Gene Families AT4G10950 26.593 8.53e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04035 - - tpra:123893080 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04035 3 1190023867 1190025744 Vifa3g04035 3 1190023867 1190025744 ECH